Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2161280..2161551 | Replicon | chromosome |
| Accession | NZ_CP040305 | ||
| Organism | Escherichia coli strain HB6 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2161410..2161513 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2161280..2161551 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| FEL06_RS10270 | 2157835..2158497 | - | 663 | WP_000944243.1 | exodeoxyribonuclease X | - |
| FEL06_RS10275 | 2158521..2159177 | - | 657 | WP_000011656.1 | carbon-nitrogen hydrolase family protein | - |
| FEL06_RS10280 | 2159279..2159509 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| FEL06_RS10285 | 2159648..2160022 | + | 375 | WP_000168751.1 | CopC domain-containing protein YobA | - |
| FEL06_RS10290 | 2160026..2160898 | + | 873 | WP_000879315.1 | copper homeostasis membrane protein CopD | - |
| FEL06_RS10295 | 2160911..2161252 | + | 342 | WP_000976483.1 | YebY family protein | - |
| - | 2161280..2161551 | - | 272 | - | - | Antitoxin |
| - | 2161410..2161513 | + | 104 | - | - | Toxin |
| FEL06_RS10300 | 2161648..2162304 | + | 657 | WP_000812736.1 | protein-serine/threonine phosphatase | - |
| FEL06_RS10305 | 2162305..2162496 | - | 192 | WP_001296140.1 | YebW family protein | - |
| FEL06_RS10310 | 2162601..2162837 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
| FEL06_RS10315 | 2162955..2164394 | - | 1440 | WP_001302304.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T125296 NZ_CP040305:2161410-2161513 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT125296 NZ_CP040305:c2161551-2161280 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
