Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1927528..1927673 | Replicon | chromosome |
| Accession | NZ_CP040234 | ||
| Organism | Citrobacter sp. TBCP-5362 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1927563..1927666 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1927528..1927673 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| FD428_RS09290 | 1923984..1924646 | - | 663 | WP_012132019.1 | exodeoxyribonuclease X | - |
| FD428_RS09295 | 1924670..1925326 | - | 657 | WP_114847795.1 | carbon-nitrogen hydrolase family protein | - |
| FD428_RS09300 | 1925432..1925662 | - | 231 | WP_024130259.1 | DNA polymerase III subunit theta | - |
| FD428_RS09305 | 1925803..1926177 | + | 375 | WP_012132022.1 | CopC domain-containing protein YobA | - |
| FD428_RS09310 | 1926177..1927052 | + | 876 | WP_114847796.1 | copper homeostasis membrane protein CopD | - |
| FD428_RS09315 | 1927069..1927407 | + | 339 | WP_012132024.1 | YebY family protein | - |
| - | 1927528..1927673 | - | 146 | - | - | Antitoxin |
| - | 1927563..1927666 | + | 104 | - | - | Toxin |
| FD428_RS09320 | 1928074..1928265 | - | 192 | WP_012132027.1 | YlcI/YnfO family protein | - |
| FD428_RS09325 | 1928635..1930722 | - | 2088 | WP_071259049.1 | TonB-dependent receptor | - |
| FD428_RS09330 | 1930970..1931632 | + | 663 | WP_047464032.1 | protein-serine/threonine phosphatase | - |
| FD428_RS09335 | 1931633..1931824 | - | 192 | WP_012132031.1 | YebW family protein | - |
| FD428_RS09340 | 1931927..1932163 | - | 237 | WP_024130262.1 | DUF1480 family protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T125151 NZ_CP040234:1927563-1927666 [Citrobacter sp. TBCP-5362]
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT125151 NZ_CP040234:c1927673-1927528 [Citrobacter sp. TBCP-5362]
AACAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCCCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGT
AACAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCCCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGT
