Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 3498736..3498833 | Replicon | chromosome |
| Accession | NZ_CP040182 | ||
| Organism | Serratia fonticola strain MS5 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 3498738..3498833 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 3498736..3498824 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| FD644_RS16020 | 3494210..3495481 | - | 1272 | WP_071683299.1 | translesion error-prone DNA polymerase V subunit UmuC | - |
| FD644_RS16025 | 3495481..3495903 | - | 423 | WP_071683298.1 | translesion error-prone DNA polymerase V autoproteolytic subunit | - |
| FD644_RS16030 | 3496125..3496604 | - | 480 | WP_071683297.1 | hypothetical protein | - |
| FD644_RS16035 | 3496914..3497786 | - | 873 | WP_071683296.1 | excinuclease Cho | - |
| FD644_RS16040 | 3497932..3498276 | - | 345 | WP_080661079.1 | hypothetical protein | - |
| - | 3498736..3498824 | + | 89 | - | - | Antitoxin |
| - | 3498738..3498833 | - | 96 | - | - | Toxin |
| FD644_RS16045 | 3498974..3499315 | - | 342 | WP_071683295.1 | YebY family protein | - |
| FD644_RS16050 | 3499385..3500266 | - | 882 | WP_071683294.1 | copper homeostasis membrane protein CopD | - |
| FD644_RS16055 | 3500270..3500653 | - | 384 | WP_024485865.1 | CopC domain-containing protein YobA | - |
| FD644_RS16060 | 3500976..3501494 | - | 519 | WP_024485864.1 | non-heme ferritin | - |
| FD644_RS16065 | 3501882..3502112 | + | 231 | WP_021181054.1 | DNA polymerase III subunit theta | - |
| FD644_RS16070 | 3502718..3503707 | - | 990 | WP_071682956.1 | prolyl aminopeptidase | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 3483874..3509709 | 25835 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 96 bp
>T125063 NZ_CP040182:c3498833-3498738 [Serratia fonticola]
AACAAACCTTGCATAAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCCTTTCCCTAGACCGAGTATAGGAATCG
TACTCGGTCTTTTTTT
AACAAACCTTGCATAAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCCTTTCCCTAGACCGAGTATAGGAATCG
TACTCGGTCTTTTTTT
Antitoxin
Download Length: 89 bp
>AT125063 NZ_CP040182:3498736-3498824 [Serratia fonticola]
ATAAAAAAAGACCGAGTACGATTCCTATACTCGGTCTAGGGAAAGGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATTTATGCA
ATAAAAAAAGACCGAGTACGATTCCTATACTCGGTCTAGGGAAAGGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATTTATGCA
