Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 3026267..3026412 | Replicon | chromosome |
| Accession | NZ_CP040122 | ||
| Organism | Klebsiella pneumoniae strain LSH-KPN148 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 3026274..3026376 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 3026267..3026412 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| FDY04_RS14825 | 3021799..3023232 | + | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| FDY04_RS14830 | 3023348..3023587 | + | 240 | WP_002911393.1 | YebV family protein | - |
| FDY04_RS14835 | 3023685..3023876 | + | 192 | WP_002911395.1 | YebW family protein | - |
| FDY04_RS14840 | 3023873..3024526 | - | 654 | WP_004180432.1 | protein-serine/threonine phosphatase | - |
| FDY04_RS14845 | 3024683..3025651 | + | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| FDY04_RS14850 | 3025756..3025899 | + | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| - | 3026267..3026412 | + | 146 | - | - | Antitoxin |
| - | 3026274..3026376 | - | 103 | - | - | Toxin |
| FDY04_RS14855 | 3026535..3026873 | - | 339 | WP_002911404.1 | YebY family protein | - |
| FDY04_RS14860 | 3026890..3027759 | - | 870 | WP_062955019.1 | copper homeostasis membrane protein CopD | - |
| FDY04_RS14865 | 3027763..3028137 | - | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| FDY04_RS14870 | 3028250..3028480 | + | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| FDY04_RS14875 | 3028559..3029218 | + | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| FDY04_RS14880 | 3029222..3031282 | - | 2061 | WP_004151449.1 | oligopeptidase B | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T124999 NZ_CP040122:c3026376-3026274 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT124999 NZ_CP040122:3026267-3026412 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
