Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) vapBC/LOTUS_5_Limkain_b1(toxin)
Location 5327436..5328061 Replicon chromosome
Accession NZ_CP040023
Organism Klebsiella pneumoniae strain KPC160132

Toxin (Protein)


Gene name vapC Uniprot ID R4Y4A3
Locus tag FDK24_RS26905 Protein ID WP_002882817.1
Coordinates 5327436..5327819 (-) Length 128 a.a.

Antitoxin (Protein)


Gene name vapB Uniprot ID J2DFR0
Locus tag FDK24_RS26910 Protein ID WP_004150355.1
Coordinates 5327819..5328061 (-) Length 81 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
FDK24_RS26890 5324802..5325704 + 903 WP_002882822.1 formate dehydrogenase subunit beta -
FDK24_RS26895 5325701..5326336 + 636 WP_002882818.1 formate dehydrogenase cytochrome b556 subunit -
FDK24_RS26900 5326333..5327262 + 930 WP_004150358.1 formate dehydrogenase accessory protein FdhE -
FDK24_RS26905 5327436..5327819 - 384 WP_002882817.1 type II toxin-antitoxin system VapC family toxin Toxin
FDK24_RS26910 5327819..5328061 - 243 WP_004150355.1 ribbon-helix-helix domain-containing protein Antitoxin
FDK24_RS26915 5328266..5329183 + 918 WP_108714542.1 alpha/beta hydrolase -
FDK24_RS26920 5329197..5330138 - 942 WP_004178031.1 fatty acid biosynthesis protein FabY -
FDK24_RS26925 5330183..5330620 - 438 WP_002882809.1 D-tyrosyl-tRNA(Tyr) deacylase -
FDK24_RS26930 5330617..5331477 - 861 WP_002882807.1 virulence factor BrkB family protein -
FDK24_RS26935 5331471..5332070 - 600 WP_004151865.1 glucose-1-phosphatase -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

PIN domain

(7-112)

Antitoxin

Predicted DNA-binding protein, ribbon-helix-helix domain

(16-47)


Sequences

Toxin        


Download         Length: 128 a.a.        Molecular weight: 14377.62 Da        Isoelectric Point: 7.3178

>T124778 WP_002882817.1 NZ_CP040023:c5327819-5327436 [Klebsiella pneumoniae]
MTSGSALFDTNILIDLFSGRREAKQALEAWPPQNAISLITWMEVMVGAKKYHQEQRTRMALSTFNIINISQDIAERSVAL
RQEYKLKLPDAIILATAQLHRLELITRNTKDFAGIPGVVTPYEIHPE

Download         Length: 384 bp

>T124778 NZ_CP040023:c5327819-5327436 [Klebsiella pneumoniae]
ATGACCTCCGGATCTGCGCTTTTTGATACCAATATTCTTATTGATTTATTTAGCGGGCGTCGCGAAGCCAAACAGGCGCT
GGAGGCCTGGCCACCGCAGAATGCGATCAGTCTGATTACCTGGATGGAGGTGATGGTTGGCGCTAAAAAATATCACCAGG
AGCAGCGCACGCGAATGGCGCTGAGCACCTTTAATATCATTAACATCTCACAGGATATTGCAGAGCGAAGCGTTGCGCTG
CGGCAGGAGTATAAGCTTAAGCTGCCGGATGCCATCATTCTGGCGACGGCGCAACTCCATCGTCTGGAACTAATTACGCG
GAATACGAAGGATTTTGCCGGTATTCCTGGCGTAGTCACGCCGTACGAAATCCACCCTGAATAA

Antitoxin


Download         Length: 81 a.a.        Molecular weight: 9567.83 Da        Isoelectric Point: 4.3509

>AT124778 WP_004150355.1 NZ_CP040023:c5328061-5327819 [Klebsiella pneumoniae]
MMAERDMGRILLDLSDDVIQRLDDLKVQRNIPRAELLREAVEQYLEKQDRAKDTISSALGLWQDCEEDGMEYQRQLRKEW

Download         Length: 243 bp

>AT124778 NZ_CP040023:c5328061-5327819 [Klebsiella pneumoniae]
ATGATGGCTGAAAGGGATATGGGCAGAATTCTTCTCGATTTATCAGACGATGTCATTCAACGTCTCGATGACCTCAAAGT
GCAGCGTAACATTCCGCGAGCGGAACTGTTACGTGAAGCGGTTGAACAATATCTGGAGAAACAAGATCGAGCTAAAGATA
CCATCTCCAGTGCGCTGGGTCTGTGGCAAGACTGCGAAGAAGACGGCATGGAATATCAACGTCAGCTACGCAAGGAGTGG
TAA

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
AlphaFold DB A0A0H3GPK8

Antitoxin

Source ID Structure
AlphaFold DB A0A0H3GGU9

References