Detailed information of TA system
Bioinformatically predictedOverview
TA module
Type | II | Classification (family/domain) | vapBC/VapC-VapB |
Location | 2796270..2796835 | Replicon | chromosome |
Accession | NZ_CP040007 | ||
Organism | Arachnia propionica strain F0700 |
Toxin (Protein)
Gene name | vapC | Uniprot ID | A0A3N4CZH7 |
Locus tag | FBF34_RS12600 | Protein ID | WP_014847549.1 |
Coordinates | 2796270..2796632 (-) | Length | 121 a.a. |
Antitoxin (Protein)
Gene name | vapB | Uniprot ID | A0A3N4D1U3 |
Locus tag | FBF34_RS12605 | Protein ID | WP_014847550.1 |
Coordinates | 2796629..2796835 (-) | Length | 69 a.a. |
Genomic Context
Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
---|---|---|---|---|---|---|
FBF34_RS12570 | 2791381..2791650 | + | 270 | WP_014847541.1 | FmdB family transcriptional regulator | - |
FBF34_RS12575 | 2791719..2792333 | + | 615 | WP_014847542.1 | SAF domain-containing protein | - |
FBF34_RS12580 | 2792626..2792985 | + | 360 | WP_014847544.1 | large conductance mechanosensitive channel protein MscL | - |
FBF34_RS12585 | 2793033..2793377 | - | 345 | WP_014847545.1 | hypothetical protein | - |
FBF34_RS12590 | 2793380..2794756 | - | 1377 | WP_041696701.1 | UTP--glucose-1-phosphate uridylyltransferase | - |
FBF34_RS12595 | 2795150..2795869 | + | 720 | WP_071162217.1 | hypothetical protein | - |
FBF34_RS12600 | 2796270..2796632 | - | 363 | WP_014847549.1 | type II toxin-antitoxin system VapC family toxin | Toxin |
FBF34_RS12605 | 2796629..2796835 | - | 207 | WP_014847550.1 | type II toxin-antitoxin system VapB family antitoxin | Antitoxin |
FBF34_RS12610 | 2797013..2797579 | - | 567 | WP_014847551.1 | TetR family transcriptional regulator C-terminal domain-containing protein | - |
FBF34_RS12615 | 2797645..2798661 | + | 1017 | WP_123824095.1 | alpha/beta hydrolase | - |
FBF34_RS12620 | 2798671..2799711 | - | 1041 | WP_014847553.1 | glycosyl hydrolase | - |
Associated MGEs
MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 121 a.a. Molecular weight: 13682.99 Da Isoelectric Point: 7.9144
>T124746 WP_014847549.1 NZ_CP040007:c2796632-2796270 [Arachnia propionica]
VILVDTSVWIDHFRRSDLRLVRLLRGDEAGCHAMVIGELSLSSMPARTVRMSYLSNLYRFPSLHDDELLHLVETRRLWGR
GLSLVDVNLIGSVLVVPGACLWTRDKRLRAVAKELEIAFE
VILVDTSVWIDHFRRSDLRLVRLLRGDEAGCHAMVIGELSLSSMPARTVRMSYLSNLYRFPSLHDDELLHLVETRRLWGR
GLSLVDVNLIGSVLVVPGACLWTRDKRLRAVAKELEIAFE
Download Length: 363 bp
>T124746 NZ_CP040007:c2796632-2796270 [Arachnia propionica]
GTGATCCTCGTCGACACCTCCGTCTGGATCGACCACTTCCGTCGCAGCGACCTGCGTCTGGTGCGCCTGCTGCGCGGAGA
CGAGGCAGGCTGCCACGCCATGGTCATCGGGGAGCTGTCGCTGAGTTCCATGCCCGCCCGCACGGTGCGGATGTCATACC
TGTCGAACCTGTACCGGTTCCCCAGCCTCCACGACGACGAACTGCTGCACCTCGTCGAGACCAGACGGTTGTGGGGTCGC
GGCCTCAGCCTGGTTGACGTCAACCTCATCGGCTCCGTCCTGGTGGTCCCGGGGGCCTGCCTGTGGACCCGCGACAAACG
TCTCCGGGCGGTCGCCAAGGAGCTGGAGATCGCCTTCGAGTGA
GTGATCCTCGTCGACACCTCCGTCTGGATCGACCACTTCCGTCGCAGCGACCTGCGTCTGGTGCGCCTGCTGCGCGGAGA
CGAGGCAGGCTGCCACGCCATGGTCATCGGGGAGCTGTCGCTGAGTTCCATGCCCGCCCGCACGGTGCGGATGTCATACC
TGTCGAACCTGTACCGGTTCCCCAGCCTCCACGACGACGAACTGCTGCACCTCGTCGAGACCAGACGGTTGTGGGGTCGC
GGCCTCAGCCTGGTTGACGTCAACCTCATCGGCTCCGTCCTGGTGGTCCCGGGGGCCTGCCTGTGGACCCGCGACAAACG
TCTCCGGGCGGTCGCCAAGGAGCTGGAGATCGCCTTCGAGTGA
Antitoxin
Download Length: 69 a.a. Molecular weight: 7449.47 Da Isoelectric Point: 5.0807
>AT124746 WP_014847550.1 NZ_CP040007:c2796835-2796629 [Arachnia propionica]
MRTTVTLDDDLVARAQELTGVKERSVLLREGLETLIRVESARRLAALGGTEPEAQISSRTRDLGDLAK
MRTTVTLDDDLVARAQELTGVKERSVLLREGLETLIRVESARRLAALGGTEPEAQISSRTRDLGDLAK
Download Length: 207 bp
>AT124746 NZ_CP040007:c2796835-2796629 [Arachnia propionica]
ATGAGAACCACCGTTACCCTGGACGACGACTTGGTGGCACGCGCCCAGGAACTGACCGGCGTCAAGGAACGTTCCGTCCT
GCTCCGTGAGGGCCTCGAGACGCTGATTCGCGTCGAGAGCGCCCGCCGCCTGGCCGCGCTCGGCGGCACCGAACCGGAGG
CGCAGATATCGTCGCGGACCCGGGACCTCGGGGACCTCGCGAAGTGA
ATGAGAACCACCGTTACCCTGGACGACGACTTGGTGGCACGCGCCCAGGAACTGACCGGCGTCAAGGAACGTTCCGTCCT
GCTCCGTGAGGGCCTCGAGACGCTGATTCGCGTCGAGAGCGCCCGCCGCCTGGCCGCGCTCGGCGGCACCGAACCGGAGG
CGCAGATATCGTCGCGGACCCGGGACCTCGGGGACCTCGCGAAGTGA
Similar Proteins
Only experimentally validated proteins are listed.
Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
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Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
---|
Structures
Toxin
Source | ID | Structure |
---|---|---|
AlphaFold DB | A0A3N4CZH7 |
Antitoxin
Source | ID | Structure |
---|---|---|
AlphaFold DB | A0A3N4D1U3 |