Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1984861..1985006 | Replicon | chromosome |
| Accession | NZ_CP039954 | ||
| Organism | Klebsiella pneumoniae strain AR142_2b | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1984897..1984999 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1984861..1985006 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| FC647_RS09515 | 1979991..1982051 | + | 2061 | WP_004148850.1 | oligopeptidase B | - |
| FC647_RS09520 | 1982055..1982714 | - | 660 | WP_032435029.1 | exodeoxyribonuclease X | - |
| FC647_RS09525 | 1982793..1983023 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| FC647_RS09530 | 1983136..1983510 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| FC647_RS09535 | 1983514..1984383 | + | 870 | WP_032435031.1 | copper homeostasis membrane protein CopD | - |
| FC647_RS09540 | 1984400..1984738 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 1984861..1985006 | - | 146 | - | - | Antitoxin |
| - | 1984897..1984999 | + | 103 | - | - | Toxin |
| FC647_RS09545 | 1985374..1985517 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| FC647_RS09550 | 1985622..1986590 | - | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| FC647_RS09555 | 1986747..1987400 | + | 654 | WP_004891053.1 | protein-serine/threonine phosphatase | - |
| FC647_RS09560 | 1987397..1987588 | - | 192 | WP_002911395.1 | YebW family protein | - |
| FC647_RS09565 | 1987686..1987925 | - | 240 | WP_002911393.1 | YebV family protein | - |
| FC647_RS09570 | 1988041..1989474 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T124651 NZ_CP039954:1984897-1984999 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT124651 NZ_CP039954:c1985006-1984861 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
