Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 4128895..4129040 | Replicon | chromosome |
| Accession | NZ_CP039951 | ||
| Organism | Klebsiella pneumoniae strain 18KM2445b | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 4128931..4129033 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 4128895..4129040 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| FC646_RS19645 | 4124025..4126085 | + | 2061 | WP_004148850.1 | oligopeptidase B | - |
| FC646_RS19650 | 4126089..4126748 | - | 660 | WP_032435029.1 | exodeoxyribonuclease X | - |
| FC646_RS19655 | 4126827..4127057 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| FC646_RS19660 | 4127170..4127544 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| FC646_RS19665 | 4127548..4128417 | + | 870 | WP_032435031.1 | copper homeostasis membrane protein CopD | - |
| FC646_RS19670 | 4128434..4128772 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 4128895..4129040 | - | 146 | - | - | Antitoxin |
| - | 4128931..4129033 | + | 103 | - | - | Toxin |
| FC646_RS19675 | 4129408..4129551 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| FC646_RS19680 | 4129656..4130624 | - | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| FC646_RS19685 | 4130781..4131434 | + | 654 | WP_004891053.1 | protein-serine/threonine phosphatase | - |
| FC646_RS19690 | 4131431..4131622 | - | 192 | WP_002911395.1 | YebW family protein | - |
| FC646_RS19695 | 4131720..4131959 | - | 240 | WP_002911393.1 | YebV family protein | - |
| FC646_RS19700 | 4132075..4133508 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T124637 NZ_CP039951:4128931-4129033 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT124637 NZ_CP039951:c4129040-4128895 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
