Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) parDE/RHH(antitoxin)
Location 3259865..3260412 Replicon chromosome
Accession NZ_CP039934
Organism Myroides fluvii strain CJ210

Toxin (Protein)


Gene name parE Uniprot ID -
Locus tag FBR08_RS14480 Protein ID WP_158963375.1
Coordinates 3259865..3260164 (-) Length 100 a.a.

Antitoxin (Protein)


Gene name parD Uniprot ID -
Locus tag FBR08_RS14485 Protein ID WP_158963376.1
Coordinates 3260161..3260412 (-) Length 84 a.a.

Genomic Context

FBR08_RS14460FBR08_RS14465FBR08_RS14470FBR08_RS14475FBR08_RS14495FBR08_RS16790FBR08_RS14480FBR08_RS14485FBR08_RS14490FBR08_RS14500
Location: 3255031..3255405 (375 bp)
Type: Others
Protein ID: WP_158963371.1
Location: 3255484..3255774 (291 bp)
Type: Others
Protein ID: WP_158963372.1
Location: 3256049..3258475 (2427 bp)
Type: Others
Protein ID: WP_158963373.1
Location: 3258495..3259802 (1308 bp)
Type: Others
Protein ID: WP_158963374.1
Location: 3263918..3264502 (585 bp)
Type: Others
Protein ID: WP_158963378.1
Location: 3264551..3264706 (156 bp)
Type: Others
Protein ID: WP_199268607.1
Location: 3259865..3260164 (300 bp)
Type: Toxin
Protein ID: WP_158963375.1
Location: 3260161..3260412 (252 bp)
Type: Antitoxin
Protein ID: WP_158963376.1
Location: 3260882..3263692 (2811 bp)
Type: Others
Protein ID: WP_158963377.1
Location: 3264720..3265391 (672 bp)
Type: Others
Protein ID: WP_158963379.1
ToxinAntitoxinOther genes
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Locus tag
Coordinates
Strand
Size (bp)
Protein ID
Product
Description
FBR08_RS144603255031..3255405+375WP_158963371.1rhodanese-like domain-containing protein-
FBR08_RS144653255484..3255774+291WP_158963372.1DUF4834 family protein-
FBR08_RS144703256049..3258475+2427WP_158963373.1YfhO family protein-
FBR08_RS144753258495..3259802+1308WP_158963374.1glycosyltransferase family 4 protein-
FBR08_RS144803259865..3260164-300WP_158963375.1type II toxin-antitoxin system RelE/ParE family toxinToxin
FBR08_RS144853260161..3260412-252WP_158963376.1type II toxin-antitoxin system ParD family antitoxinAntitoxin
FBR08_RS144903260882..3263692-2811WP_158963377.1excinuclease ABC subunit UvrA-
FBR08_RS144953263918..3264502+585WP_158963378.1sigma-70 family RNA polymerase sigma factor-
FBR08_RS167903264551..3264706+156WP_199268607.1hypothetical protein-
FBR08_RS145003264720..3265391-672WP_158963379.1endonuclease III-

Associated MGEs

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MGE
detail
Similar
MGEs
Relative
position
MGE Type
Cargo ARG
Virulence gene
Coordinates
Length (bp)
No matching records found


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin-antitoxin system, RelE/ParE toxin family

(3-92)

Antitoxin

Antitoxin ParD

(4-67)


Sequences

Toxin        


Download         Length: 100 a.a.        Molecular weight: 12179.99 Da        Isoelectric Point: 6.8799

>T124520 WP_158963375.1 NZ_CP039934:c3260164-3259865 [Myroides fluvii]
MKYKISKQAKLDLEQIWLYTFKEWSLEQADYYFDLLVNEMEYIADHPNLGKDYNEVRKGYFRSRVKSHFIFYKVNLLEEK
VEIIRILHQQMDVDSHINK

Download         Length: 300 bp

>T124520 NZ_CP039934:c3260164-3259865 [Myroides fluvii]
ATGAAATATAAGATTAGTAAACAAGCTAAACTTGATTTAGAACAAATTTGGCTTTACACTTTTAAAGAATGGTCCTTGGA
GCAAGCGGATTACTATTTTGACTTACTCGTAAATGAAATGGAATATATTGCTGATCATCCAAACTTAGGAAAAGATTATA
ATGAGGTGAGAAAAGGTTATTTCCGTTCAAGAGTAAAATCTCATTTTATATTCTACAAAGTCAATCTGCTAGAAGAAAAA
GTAGAAATCATAAGAATCTTACATCAACAAATGGATGTTGATTCTCATATCAATAAATAG

Antitoxin


Download         Length: 84 a.a.        Molecular weight: 9546.75 Da        Isoelectric Point: 6.4688

>AT124520 WP_158963376.1 NZ_CP039934:c3260412-3260161 [Myroides fluvii]
MAKNTSILLGDYFDDFINAQIKSGKYSSASEVVRAALRMFEHQETKKLALIKELQQGEESGFSPDFNREIFKQNLHKKYS
AEE

Download         Length: 252 bp

>AT124520 NZ_CP039934:c3260412-3260161 [Myroides fluvii]
ATGGCAAAAAACACTTCGATTTTATTGGGCGATTATTTCGACGATTTTATCAATGCACAAATAAAAAGTGGAAAATATTC
TTCTGCAAGTGAAGTTGTAAGAGCTGCTTTAAGAATGTTTGAACACCAAGAAACTAAAAAATTAGCCTTAATAAAGGAAC
TTCAGCAAGGAGAAGAATCTGGGTTTTCTCCTGATTTCAATCGCGAAATTTTTAAACAAAACCTACATAAAAAATATTCC
GCTGAAGAATGA

Similar Proteins

Only experimentally validated proteins are listed.

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Protein
Organism
Identities (%)
Coverage (%)
Ha-value
No matching records found
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Protein
Organism
Identities (%)
Coverage (%)
Ha-value
No matching records found

Structures

Toxin

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Source
ID
Structure
No matching records found

Antitoxin

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Source
ID
Structure
No matching records found

References