Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2338244..2338515 | Replicon | chromosome |
| Accession | NZ_CP039837 | ||
| Organism | Escherichia coli O157:H7 strain USDA5905 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2338374..2338477 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2338244..2338515 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| E3175_RS11520 | 2334799..2335461 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| E3175_RS11525 | 2335485..2336141 | - | 657 | WP_000011661.1 | carbon-nitrogen hydrolase family protein | - |
| E3175_RS11530 | 2336243..2336473 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| E3175_RS11535 | 2336612..2336986 | + | 375 | WP_000168751.1 | CopC domain-containing protein YobA | - |
| E3175_RS11540 | 2336990..2337862 | + | 873 | WP_000879314.1 | copper homeostasis membrane protein CopD | - |
| E3175_RS11545 | 2337875..2338216 | + | 342 | WP_000976483.1 | YebY family protein | - |
| - | 2338244..2338515 | - | 272 | - | - | Antitoxin |
| - | 2338374..2338477 | + | 104 | - | - | Toxin |
| E3175_RS11550 | 2338612..2339268 | + | 657 | WP_000812736.1 | protein-serine/threonine phosphatase | - |
| E3175_RS11555 | 2339269..2339460 | - | 192 | WP_001296140.1 | YebW family protein | - |
| E3175_RS11560 | 2339565..2339801 | - | 237 | WP_001359800.1 | DUF1480 family protein | - |
| E3175_RS11565 | 2339919..2341358 | - | 1440 | WP_001302304.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T124344 NZ_CP039837:2338374-2338477 [Escherichia coli O157:H7]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT124344 NZ_CP039837:c2338515-2338244 [Escherichia coli O157:H7]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
