Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) Hha-TomB/-
Location 4309565..4310184 Replicon chromosome
Accession NZ_CP039819
Organism Klebsiella pneumoniae strain C2414

Toxin (Protein)


Gene name Hha Uniprot ID R8WYV2
Locus tag FA958_RS21865 Protein ID WP_002892050.1
Coordinates 4309966..4310184 (+) Length 73 a.a.

Antitoxin (Protein)


Gene name TomB Uniprot ID J2DPF6
Locus tag FA958_RS21860 Protein ID WP_002892066.1
Coordinates 4309565..4309939 (+) Length 125 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
FA958_RS21850 4304717..4305910 + 1194 WP_002892072.1 multidrug efflux RND transporter periplasmic adaptor subunit AcrA -
FA958_RS21855 4305933..4309079 + 3147 WP_020326861.1 multidrug efflux RND transporter permease subunit -
FA958_RS21860 4309565..4309939 + 375 WP_002892066.1 Hha toxicity modulator TomB Antitoxin
FA958_RS21865 4309966..4310184 + 219 WP_002892050.1 hemolysin expression modulator Hha Toxin
FA958_RS21870 4310343..4310909 + 567 WP_002892030.1 maltose O-acetyltransferase -
FA958_RS21875 4310881..4311021 - 141 WP_004147370.1 hypothetical protein -
FA958_RS21880 4311042..4311512 + 471 WP_002892026.1 YlaC family protein -
FA958_RS21885 4311487..4312938 - 1452 WP_002892023.1 PLP-dependent aminotransferase family protein -
FA958_RS21890 4313039..4313737 + 699 WP_002892021.1 GNAT family N-acetyltransferase -
FA958_RS21895 4313734..4313874 - 141 WP_002892018.1 type B 50S ribosomal protein L36 -
FA958_RS21900 4313874..4314137 - 264 WP_002892011.1 type B 50S ribosomal protein L31 -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Haemolysin expression modulating, HHA

(13-69)

Antitoxin

Biofilm formation regulator YbaJ

(1-116)


Sequences

Toxin        


Download         Length: 73 a.a.        Molecular weight: 8628.00 Da        Isoelectric Point: 8.9008

>T124291 WP_002892050.1 NZ_CP039819:4309966-4310184 [Klebsiella pneumoniae]
MSDKPLTKTDYLMRLRRCQTIDTLERVIEKNKYELSDNELAVFYSAADHRLAELTMNKLYDKIPTSVWKFIR

Download         Length: 219 bp

>T124291 NZ_CP039819:4309966-4310184 [Klebsiella pneumoniae]
ATGTCTGATAAGCCATTAACTAAAACAGACTATTTGATGCGCTTACGTCGTTGCCAGACAATTGACACGCTGGAGCGCGT
CATTGAAAAAAATAAATATGAACTGTCTGATAATGAGCTGGCGGTATTTTACTCAGCTGCCGACCATCGTCTGGCGGAAC
TGACCATGAATAAGCTATACGATAAAATCCCGACTTCTGTCTGGAAATTTATCCGCTAA

Antitoxin


Download         Length: 125 a.a.        Molecular weight: 14368.06 Da        Isoelectric Point: 4.8989

>AT124291 WP_002892066.1 NZ_CP039819:4309565-4309939 [Klebsiella pneumoniae]
MDEYSPKRHDIAQLRFLCETLYHDCLANLEESNHGWVNDPTSAVNLQLNELIEHIATFALNYKIKYAEDNKLIAQVDEYL
DDTFTLFSNYGINSTDLQKWKKSGNRLFRCFVNASRENPASLSC

Download         Length: 375 bp

>AT124291 NZ_CP039819:4309565-4309939 [Klebsiella pneumoniae]
ATGGACGAATACTCGCCAAAAAGACATGATATTGCACAGCTACGCTTTCTCTGCGAAACGCTGTATCATGACTGCCTTGC
AAACCTGGAAGAGAGCAACCATGGCTGGGTCAACGACCCGACGTCGGCTGTCAATCTCCAGTTAAATGAATTGATCGAGC
ACATTGCCACATTCGCTCTTAATTATAAAATTAAGTATGCAGAGGATAATAAGCTGATCGCTCAGGTTGACGAATATCTG
GACGACACTTTTACGTTGTTCAGTAACTACGGCATTAACTCTACGGATTTGCAAAAGTGGAAAAAATCCGGTAACCGACT
ATTTCGTTGCTTTGTCAACGCCAGCCGGGAAAACCCGGCCAGTCTATCGTGTTAG

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
AlphaFold DB A0A2P8K6F2

Antitoxin

Source ID Structure
AlphaFold DB A0A0H3GJ93

References