Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2044833..2044978 | Replicon | chromosome |
| Accession | NZ_CP039808 | ||
| Organism | Klebsiella pneumoniae strain C2660 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2044869..2044971 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2044833..2044978 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| FA957_RS10170 | 2039963..2042023 | + | 2061 | WP_004151449.1 | oligopeptidase B | - |
| FA957_RS10175 | 2042027..2042686 | - | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| FA957_RS10180 | 2042765..2042995 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| FA957_RS10185 | 2043108..2043482 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| FA957_RS10190 | 2043486..2044355 | + | 870 | WP_062955019.1 | copper homeostasis membrane protein CopD | - |
| FA957_RS10195 | 2044372..2044710 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 2044833..2044978 | - | 146 | - | - | Antitoxin |
| - | 2044869..2044971 | + | 103 | - | - | Toxin |
| FA957_RS10200 | 2045346..2045489 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| FA957_RS10205 | 2045594..2046562 | - | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| FA957_RS10210 | 2046719..2047372 | + | 654 | WP_004180432.1 | protein-serine/threonine phosphatase | - |
| FA957_RS10215 | 2047369..2047560 | - | 192 | WP_002911395.1 | YebW family protein | - |
| FA957_RS10220 | 2047658..2047897 | - | 240 | WP_002911393.1 | YebV family protein | - |
| FA957_RS10225 | 2048013..2049446 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T124253 NZ_CP039808:2044869-2044971 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT124253 NZ_CP039808:c2044978-2044833 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
