Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2022196..2022343 | Replicon | chromosome |
| Accession | NZ_CP039791 | ||
| Organism | Klebsiella quasipneumoniae strain C3001 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2022237..2022339 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2022196..2022343 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| FA956_RS09995 | 2017331..2019391 | + | 2061 | WP_101861959.1 | oligopeptidase B | - |
| FA956_RS10000 | 2019395..2020054 | - | 660 | WP_101861958.1 | exodeoxyribonuclease X | - |
| FA956_RS10005 | 2020133..2020363 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| FA956_RS10010 | 2020476..2020850 | + | 375 | WP_101861957.1 | CopC domain-containing protein YobA | - |
| FA956_RS10015 | 2020854..2021723 | + | 870 | WP_101861956.1 | copper homeostasis membrane protein CopD | - |
| FA956_RS10020 | 2021740..2022078 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 2022196..2022343 | - | 148 | - | - | Antitoxin |
| - | 2022237..2022339 | + | 103 | - | - | Toxin |
| FA956_RS10025 | 2022718..2022861 | - | 144 | WP_032425946.1 | Ecr family regulatory small membrane protein | - |
| FA956_RS10030 | 2022962..2023930 | - | 969 | WP_072413392.1 | VirK/YbjX family protein | - |
| FA956_RS10035 | 2024087..2024740 | + | 654 | WP_023290232.1 | protein-serine/threonine phosphatase | - |
| FA956_RS10040 | 2024737..2024928 | - | 192 | WP_002911395.1 | YebW family protein | - |
| FA956_RS10045 | 2025026..2025265 | - | 240 | WP_002911393.1 | YebV family protein | - |
| FA956_RS10050 | 2025381..2026811 | - | 1431 | WP_044523969.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T124236 NZ_CP039791:2022237-2022339 [Klebsiella quasipneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 148 bp
>AT124236 NZ_CP039791:c2022343-2022196 [Klebsiella quasipneumoniae]
AGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTG
GCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGTCTGCG
AGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTG
GCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGTCTGCG
