Detailed information of TA system TA124064

Bioinformatically predicted

Overview

TA module

• Type: II
• Classification (family/domain): relBE/Phd(antitoxin)
• Location: 1990156..1990700
• Replicon: chromosome
• Accession: NZ_CP039516
• Organism: Salinivibrio sp. YCSC6

Toxin (Protein)

• Gene name: relE
• Uniprot ID: A0A1V3HA63
• Locus tag: E8E00_RS09125
• Protein ID: WP_021024563.1
• Coordinates: 1990156..1990455 (-)
• Length: 100 a.a.

Antitoxin (Protein)

• Gene name: relB
• Uniprot ID: -
• Locus tag: E8E00_RS09130
• Protein ID: WP_096631634.1
• Coordinates: 1990443..1990700 (-)
• Length: 86 a.a.

Genomic Context

Locus tag	Coordinates	Strand	Size (bp)	Protein ID	Product	Description

Associated MGEs

MGE detail	Similar MGEs	Relative position	MGE Type	Cargo ARG	Virulence gene	Coordinates	Length (bp)

Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.

Domains

Predicted by InterproScan

Toxin

• Toxin-antitoxin system, RelE/ParE toxin family (4-91)

Antitoxin

• Type II toxin-antitoxin system, antitoxin Phd/YefM (1-69)

Sequences

Toxin

Protein

• Length: 100 a.a.
• Molecular weight: 11335.15 Da
• Isoelectric Point: 4.5994

>T124064 WP_021024563.1 NZ_CP039516:c1990455-1990156 [Salinivibrio sp. YCSC6]
MAQIVWTEPALADLNDVAEYVALDNLVAAKALVQAAFTAVERLVLFPDSGRVPPELPHLNYREVVVNPCRIFYKQEEDTV
FILFVMRSEQDLRKFLLSR

Nucleotide

• Length: 300 bp

>T124064 NZ_CP039516:c1990455-1990156 [Salinivibrio sp. YCSC6]
ATGGCTCAAATAGTTTGGACTGAGCCTGCGTTGGCAGATCTGAATGACGTTGCTGAATATGTTGCACTGGACAACCTGGT
TGCAGCTAAAGCGCTAGTGCAAGCGGCCTTTACCGCAGTGGAGCGGTTAGTGCTTTTTCCTGATTCTGGTCGAGTGCCAC
CTGAACTACCGCACTTGAATTATCGAGAGGTGGTGGTGAATCCTTGTCGTATTTTCTATAAGCAAGAAGAAGACACGGTG
TTTATCTTATTCGTCATGCGTTCAGAACAGGATCTACGTAAGTTCTTACTATCGCGTTAA

Antitoxin

Protein

• Length: 86 a.a.
• Molecular weight: 9784.42 Da
• Isoelectric Point: 9.5940

>AT124064 WP_096631634.1 NZ_CP039516:c1990700-1990443 [Salinivibrio sp. YCSC6]
MKVELVTTLKRQATKILSELKANKEPVLITEHGKPSAYLLSVDDYELMQRRLAILEGIARGERAITEEKLVSHHDAKEQM
SRWLK

Nucleotide

• Length: 258 bp

>AT124064 NZ_CP039516:c1990700-1990443 [Salinivibrio sp. YCSC6]
ATGAAAGTAGAACTTGTGACCACACTGAAGCGTCAGGCAACCAAAATTTTGTCTGAATTGAAGGCGAATAAAGAGCCTGT
TTTGATCACCGAACATGGTAAGCCTTCAGCATACTTATTAAGTGTGGATGATTACGAATTAATGCAGCGCCGTCTTGCTA
TCTTAGAAGGGATCGCGCGTGGCGAGCGCGCCATTACTGAAGAGAAGCTCGTGAGTCACCATGATGCCAAGGAACAAATG
TCCAGATGGCTCAAATAG

Structures

Toxin

• AlphaFold DB: A0A1V3HA63