Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) relB-yefM/YoeB-RelB
Location 1775453..1775969 Replicon chromosome
Accession NZ_CP039516
Organism Salinivibrio sp. YCSC6

Toxin (Protein)


Gene name relB Uniprot ID -
Locus tag E8E00_RS08085 Protein ID WP_021024592.1
Coordinates 1775453..1775722 (-) Length 90 a.a.

Antitoxin (Protein)


Gene name yefM Uniprot ID -
Locus tag E8E00_RS08090 Protein ID WP_096627923.1
Coordinates 1775709..1775969 (-) Length 87 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
E8E00_RS08065 1772108..1773451 + 1344 WP_096627928.1 sodium-dependent transporter -
E8E00_RS08070 1773602..1774144 + 543 WP_096627925.1 septation protein A -
E8E00_RS08075 1774238..1774636 + 399 WP_069590096.1 acyl-CoA thioester hydrolase YciA -
E8E00_RS08080 1774707..1775102 - 396 WP_136588377.1 hypothetical protein -
E8E00_RS08085 1775453..1775722 - 270 WP_021024592.1 Txe/YoeB family addiction module toxin Toxin
E8E00_RS08090 1775709..1775969 - 261 WP_096627923.1 type II toxin-antitoxin system prevent-host-death family antitoxin Antitoxin
E8E00_RS08095 1776178..1776918 - 741 WP_096627920.1 SDR family oxidoreductase -
E8E00_RS08100 1776950..1777345 - 396 WP_096627917.1 GFA family protein -
E8E00_RS08105 1777342..1777839 - 498 WP_096627914.1 ASCH domain-containing protein -
E8E00_RS08110 1777861..1778409 - 549 WP_096627911.1 GNAT family N-acetyltransferase -
E8E00_RS08115 1778466..1778804 - 339 WP_096627908.1 hypothetical protein -
E8E00_RS08120 1778958..1779644 - 687 WP_168174029.1 GNAT family N-acetyltransferase -
E8E00_RS08125 1779696..1780043 - 348 WP_096627902.1 hypothetical protein -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin YoeB

(9-89)

Antitoxin

Type II toxin-antitoxin system, antitoxin Phd/YefM

(1-73)


Sequences

Toxin        


Download         Length: 90 a.a.        Molecular weight: 10679.21 Da        Isoelectric Point: 9.0258

>T124062 WP_021024592.1 NZ_CP039516:c1775722-1775453 [Salinivibrio sp. YCSC6]
MTMSSRLLCWTDDAWRDYVYWQSQDRKTLKRINKLILDVKRTPFEGIGKPEALKENLTGFWSRRIDDTNRLVYAVDDTSI
TILSCRYHY

Download         Length: 270 bp

>T124062 NZ_CP039516:c1775722-1775453 [Salinivibrio sp. YCSC6]
ATGACGATGAGTAGTCGCTTACTTTGCTGGACGGATGATGCGTGGCGTGACTACGTATACTGGCAAAGTCAGGATAGAAA
AACACTCAAGCGAATCAACAAGCTCATCCTCGATGTAAAACGAACGCCATTCGAGGGAATAGGTAAGCCCGAAGCACTAA
AAGAAAACCTGACCGGCTTTTGGTCGCGGCGTATTGATGATACCAATCGGCTGGTTTACGCCGTGGATGATACGTCTATT
ACGATCCTATCTTGCCGATATCACTATTAA

Antitoxin


Download         Length: 87 a.a.        Molecular weight: 9669.91 Da        Isoelectric Point: 4.5983

>AT124062 WP_096627923.1 NZ_CP039516:c1775969-1775709 [Salinivibrio sp. YCSC6]
MKIISFTEARNSLKTVLDGVVNDADTAIITRRDAEDAVVMSLDYYNSLMETVHLLRSPANAEHLNRSITQYKMGKAMEHA
LVDDDE

Download         Length: 261 bp

>AT124062 NZ_CP039516:c1775969-1775709 [Salinivibrio sp. YCSC6]
ATGAAAATCATTTCGTTTACTGAAGCGAGAAATAGCCTCAAAACGGTATTAGATGGGGTGGTTAATGACGCTGATACCGC
TATCATTACCCGACGTGATGCGGAAGACGCGGTGGTGATGTCGCTTGACTACTACAACAGCCTTATGGAAACCGTTCATC
TGTTGCGCTCACCCGCCAATGCTGAGCACCTAAATCGGTCTATTACTCAGTACAAGATGGGAAAAGCGATGGAGCACGCG
TTAGTCGATGACGATGAGTAG

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References