Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) relBE/ParE-YafN
Location 32815..33350 Replicon plasmid pCFSAN000752
Accession NZ_CP039490
Organism Salmonella enterica subsp. enterica serovar Bareilly str. CFSAN000752

Toxin (Protein)


Gene name relE Uniprot ID -
Locus tag E3385_RS23255 Protein ID WP_000221869.1
Coordinates 33063..33350 (+) Length 96 a.a.

Antitoxin (Protein)


Gene name relB Uniprot ID -
Locus tag E3385_RS23250 Protein ID WP_001132897.1
Coordinates 32815..33066 (+) Length 84 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
E3385_RS23205 28409..28942 - 534 WP_001372168.1 transcription termination factor NusG -
E3385_RS23215 29384..29671 - 288 WP_000074855.1 conjugal transfer protein TraA -
E3385_RS23220 29589..29852 - 264 WP_023156844.1 ash family protein -
E3385_RS23235 30823..31854 + 1032 WP_000907868.1 replication initiation protein -
E3385_RS23250 32815..33066 + 252 WP_001132897.1 type II toxin-antitoxin system Phd/YefM family antitoxin Antitoxin
E3385_RS23255 33063..33350 + 288 WP_000221869.1 type II toxin-antitoxin system RelE/ParE family toxin Toxin
E3385_RS23265 33656..34823 - 1168 Protein_34 IS91 family transposase -
E3385_RS23270 34827..35096 - 270 WP_001371878.1 hypothetical protein -
E3385_RS23275 35167..35349 + 183 Protein_36 helix-turn-helix domain-containing protein -
E3385_RS23280 36042..36284 + 243 WP_071781016.1 Dabb family protein -
E3385_RS23285 36381..37109 + 729 WP_047642110.1 hypothetical protein -
E3385_RS23290 37177..37677 + 501 WP_021555210.1 hypothetical protein -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)
- inside Non-Mobilizable plasmid - - 1..131067 131067


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

CbtA toxin of type IV toxin-antitoxin system

(1-112)

Antitoxin

Antitoxin CbeA

(18-117)


Sequences

Toxin        


Download         Length: 96 a.a.        Molecular weight: 12322.73 Da        Isoelectric Point: 12.7777

>T124034 WP_000221869.1 NZ_CP039490:33063-33350 [Salmonella enterica subsp. enterica serovar Bareilly str.]
KKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKK
KKKKKKKKKKKKKKKK

Download         Length: 288 bp

>T124034 NZ_CP039490:33063-33350 [Salmonella enterica subsp. enterica serovar Bareilly str.]
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Antitoxin


Download         Length: 84 a.a.        Molecular weight: 10784.64 Da        Isoelectric Point: 12.7191

>AT124034 WP_001132897.1 NZ_CP039490:32815-33066 [Salmonella enterica subsp. enterica serovar Bareilly str.]
KKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKK
KKKK

Download         Length: 252 bp

>AT124034 NZ_CP039490:32815-33066 [Salmonella enterica subsp. enterica serovar Bareilly str.]
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAA

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References