Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2278061..2278203 | Replicon | chromosome |
| Accession | NZ_CP039453 | ||
| Organism | Enterobacter bugandensis strain 220 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2278096..2278199 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2278061..2278203 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| FBF69_RS11020 | 2274544..2275206 | - | 663 | WP_136485502.1 | exodeoxyribonuclease X | - |
| FBF69_RS11025 | 2275231..2275881 | - | 651 | WP_045260312.1 | carbon-nitrogen hydrolase family protein | - |
| FBF69_RS11030 | 2275992..2276222 | - | 231 | WP_008500465.1 | DNA polymerase III subunit theta | - |
| FBF69_RS11035 | 2276359..2276730 | + | 372 | WP_136486890.1 | CopC domain-containing protein YobA | - |
| FBF69_RS11040 | 2276732..2277601 | + | 870 | WP_136485504.1 | copper homeostasis membrane protein CopD | - |
| FBF69_RS11045 | 2277618..2277956 | + | 339 | WP_028013604.1 | YebY family protein | - |
| - | 2278061..2278203 | - | 143 | - | - | Antitoxin |
| - | 2278096..2278199 | + | 104 | - | - | Toxin |
| FBF69_RS11050 | 2278398..2279273 | - | 876 | WP_136486892.1 | benzoate transporter | - |
| FBF69_RS11055 | 2279446..2280387 | - | 942 | WP_136485506.1 | VirK/YbjX family protein | - |
| FBF69_RS11060 | 2280556..2281200 | + | 645 | WP_136485508.1 | protein-serine/threonine phosphatase | - |
| FBF69_RS11065 | 2281235..2281474 | - | 240 | WP_008500472.1 | YebV family protein | - |
| FBF69_RS11070 | 2281580..2283022 | - | 1443 | WP_136485510.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T123990 NZ_CP039453:2278096-2278199 [Enterobacter bugandensis]
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 143 bp
>AT123990 NZ_CP039453:c2278203-2278061 [Enterobacter bugandensis]
AGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTG
GCATTAATGCAGGCTAAGTCGCCTTGCCTTTTAAGAATAGATGACGACGCCAGGTTTTCCAGT
AGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTG
GCATTAATGCAGGCTAAGTCGCCTTGCCTTTTAAGAATAGATGACGACGCCAGGTTTTCCAGT
