Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type VIII Classification (family/domain) SdsR-RyeA/-
Location 2738132..2738400 Replicon chromosome
Accession NZ_CP039404
Organism Escherichia coli strain 377323_2f

Toxin (RNA)


Gene name SdsR
Locus tag -
Coordinates 2738170..2738272 (-)

Antitoxin (RNA)


Gene name RyeA
Locus tag -
Coordinates 2738132..2738400 (+)

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
E9097_RS13800 2735289..2736728 + 1440 WP_053893972.1 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF -
E9097_RS13805 2736846..2737082 + 237 WP_001295499.1 DUF1480 family protein -
E9097_RS13810 2737187..2737378 + 192 WP_001357784.1 YebW family protein -
E9097_RS13815 2737379..2738035 - 657 WP_001357783.1 protein-serine/threonine phosphatase -
- 2738132..2738400 + 269 - - Antitoxin
- 2738170..2738272 - 103 - - Toxin
E9097_RS13820 2738430..2738771 - 342 WP_001357782.1 YebY family protein -
E9097_RS13825 2738784..2739656 - 873 WP_001357781.1 copper homeostasis membrane protein CopD -
E9097_RS13830 2739660..2740034 - 375 WP_000168747.1 CopC domain-containing protein YobA -
E9097_RS13835 2740173..2740403 + 231 WP_136503149.1 DNA polymerase III subunit theta -
E9097_RS13840 2740505..2741161 + 657 WP_000011664.1 carbon-nitrogen hydrolase family protein -
E9097_RS13845 2741185..2741847 + 663 WP_000944256.1 exodeoxyribonuclease X -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Sequences

Toxin        


Download         Length: 103 bp

>T123913 NZ_CP039404:c2738272-2738170 [Escherichia coli]
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT

Antitoxin


Download         Length: 269 bp

>AT123913 NZ_CP039404:2738132-2738400 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT

Structures

Antitoxin

Download structure file

Antitoxin

Download structure file

References