Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type VIII Classification (family/domain) SdsR-RyeA/-
Location 2648790..2649058 Replicon chromosome
Accession NZ_CP039403
Organism Escherichia coli strain 382634_2f

Toxin (RNA)


Gene name SdsR
Locus tag -
Coordinates 2648828..2648930 (-)

Antitoxin (RNA)


Gene name RyeA
Locus tag -
Coordinates 2648790..2649058 (+)

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
E4311_RS13110 2645947..2647386 + 1440 WP_001313925.1 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF -
E4311_RS13115 2647504..2647740 + 237 WP_001295499.1 DUF1480 family protein -
E4311_RS13120 2647845..2648036 + 192 WP_001357784.1 YebW family protein -
E4311_RS13125 2648037..2648693 - 657 WP_001357783.1 protein-serine/threonine phosphatase -
- 2648790..2649058 + 269 - - Antitoxin
- 2648828..2648930 - 103 - - Toxin
E4311_RS13130 2649088..2649429 - 342 WP_001357782.1 YebY family protein -
E4311_RS13135 2649442..2650314 - 873 WP_001357781.1 copper homeostasis membrane protein CopD -
E4311_RS13140 2650318..2650692 - 375 WP_000168747.1 CopC domain-containing protein YobA -
E4311_RS13145 2650831..2651061 + 231 WP_000916763.1 DNA polymerase III subunit theta -
E4311_RS13150 2651163..2651819 + 657 WP_000011664.1 carbon-nitrogen hydrolase family protein -
E4311_RS13155 2651843..2652505 + 663 WP_000944256.1 exodeoxyribonuclease X -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Sequences

Toxin        


Download         Length: 103 bp

>T123887 NZ_CP039403:c2648930-2648828 [Escherichia coli]
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT

Antitoxin


Download         Length: 269 bp

>AT123887 NZ_CP039403:2648790-2649058 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT

Structures

Antitoxin

Download structure file

Antitoxin

Download structure file

References