Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 4482819..4483028 | Replicon | chromosome |
| Accession | NZ_CP039388 | ||
| Organism | Enterobacter hormaechei strain cre64 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 4482832..4482935 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 4482819..4483028 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EZJ11_RS21615 (EZJ11_21900) | 4479087..4480535 | + | 1449 | WP_195892607.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| EZJ11_RS21620 (EZJ11_21905) | 4480642..4480881 | + | 240 | WP_003859885.1 | YebV family protein | - |
| EZJ11_RS21625 (EZJ11_21910) | 4480916..4481560 | - | 645 | WP_017693252.1 | protein-serine/threonine phosphatase | - |
| EZJ11_RS21630 (EZJ11_21915) | 4481728..4482708 | + | 981 | WP_023303891.1 | VirK/YbjX family protein | - |
| EZJ11_RS21635 (EZJ11_21920) | 4482754..4482951 | + | 198 | WP_017693250.1 | hypothetical protein | - |
| - | 4482819..4483028 | + | 210 | - | - | Antitoxin |
| - | 4482832..4482935 | - | 104 | - | - | Toxin |
| EZJ11_RS21640 (EZJ11_21925) | 4483077..4483415 | - | 339 | WP_003859787.1 | YebY family protein | - |
| EZJ11_RS21645 (EZJ11_21930) | 4483432..4484301 | - | 870 | WP_017693249.1 | copper homeostasis membrane protein CopD | - |
| EZJ11_RS21650 (EZJ11_21935) | 4484303..4484674 | - | 372 | WP_017384342.1 | CopC domain-containing protein YobA | - |
| EZJ11_RS21655 (EZJ11_21940) | 4484812..4485042 | + | 231 | WP_003859784.1 | DNA polymerase III subunit theta | - |
| EZJ11_RS21660 (EZJ11_21945) | 4485154..4485804 | + | 651 | WP_003859783.1 | carbon-nitrogen hydrolase family protein | - |
| EZJ11_RS21665 (EZJ11_21950) | 4485829..4486491 | + | 663 | WP_015570288.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T123863 NZ_CP039388:c4482935-4482832 [Enterobacter hormaechei]
GGCAAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 210 bp
>AT123863 NZ_CP039388:4482819-4483028 [Enterobacter hormaechei]
TTTTCAAGCAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGC
TAAAAGTTGGCATTAATGCAGGCTCAATCGCCTTGCCCTTTAAGAATAGATGACGACGTCAGGTTTTCCAGTCCACAGCA
AAAGTGGTCTGAAAAAAAGCGTCAGAACATCACTAAATGTGAAAAACCGC
TTTTCAAGCAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGC
TAAAAGTTGGCATTAATGCAGGCTCAATCGCCTTGCCCTTTAAGAATAGATGACGACGTCAGGTTTTCCAGTCCACAGCA
AAAGTGGTCTGAAAAAAAGCGTCAGAACATCACTAAATGTGAAAAACCGC
