Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2884235..2884378 | Replicon | chromosome |
| Accession | NZ_CP039327 | ||
| Organism | Citrobacter portucalensis strain Effluent_1 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2884240..2884343 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2884235..2884378 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| E7703_RS14245 | 2881443..2882489 | + | 1047 | WP_136392520.1 | recombinase RecT | - |
| E7703_RS14250 | 2882529..2882771 | + | 243 | WP_136392044.1 | DUF4060 family protein | - |
| E7703_RS14255 | 2882836..2883108 | + | 273 | WP_016156226.1 | hypothetical protein | - |
| E7703_RS14260 | 2883077..2884162 | + | 1086 | WP_136392045.1 | phage integrase Arm DNA-binding domain-containing protein | - |
| - | 2884235..2884378 | + | 144 | - | - | Antitoxin |
| - | 2884240..2884343 | - | 104 | - | - | Toxin |
| E7703_RS14265 | 2884499..2884837 | - | 339 | WP_032943770.1 | YebY family protein | - |
| E7703_RS14270 | 2884858..2885730 | - | 873 | WP_008785042.1 | copper homeostasis membrane protein CopD | - |
| E7703_RS14275 | 2885734..2886108 | - | 375 | WP_003833799.1 | CopC domain-containing protein YobA | - |
| E7703_RS14280 | 2886252..2886482 | + | 231 | WP_003034925.1 | DNA polymerase III subunit theta | - |
| E7703_RS14285 | 2886589..2887245 | + | 657 | WP_136392046.1 | carbon-nitrogen hydrolase family protein | - |
| E7703_RS14290 | 2887269..2887931 | + | 663 | WP_003833802.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 2825976..2906075 | 80099 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T123804 NZ_CP039327:c2884343-2884240 [Citrobacter portucalensis]
GGCAGGGTAACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAGGGTAACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 144 bp
>AT123804 NZ_CP039327:2884235-2884378 [Citrobacter portucalensis]
CACATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTAAGTTACCCTGCCATTTAAGAATAGATGACAGCGCCAGGTTTTCCAGT
CACATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTAAGTTACCCTGCCATTTAAGAATAGATGACAGCGCCAGGTTTTCCAGT
