Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 286190..286461 | Replicon | chromosome |
| Accession | NZ_CP039298 | ||
| Organism | Escherichia coli strain PigCaeca_1 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 286320..286423 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 286190..286461 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| E7Z58_RS01515 | 282745..283407 | - | 663 | WP_000944258.1 | exodeoxyribonuclease X | - |
| E7Z58_RS01520 | 283431..284087 | - | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein | - |
| E7Z58_RS01525 | 284189..284419 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| E7Z58_RS01530 | 284558..284932 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| E7Z58_RS01535 | 284936..285808 | + | 873 | WP_061356833.1 | copper homeostasis membrane protein CopD | - |
| E7Z58_RS01540 | 285821..286162 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 286190..286461 | - | 272 | - | - | Antitoxin |
| - | 286320..286423 | + | 104 | - | - | Toxin |
| E7Z58_RS01545 | 286558..287214 | + | 657 | WP_000812732.1 | protein-serine/threonine phosphatase | - |
| E7Z58_RS01550 | 287215..287406 | - | 192 | WP_001338167.1 | YebW family protein | - |
| E7Z58_RS01555 | 287511..287747 | - | 237 | WP_001338166.1 | DUF1480 family protein | - |
| E7Z58_RS01560 | 287865..289305 | - | 1441 | Protein_291 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T123780 NZ_CP039298:286320-286423 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT123780 NZ_CP039298:c286461-286190 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
