Detailed information of TA system
Overview
TA module
| Type | II | Classification (family/domain) | vapBC/VapC-VagC |
| Location | 55923..56567 | Replicon | plasmid unnamed3 |
| Accession | NZ_CP039222 | ||
| Organism | Piscirickettsia salmonis strain NVI 5692 | ||
Toxin (Protein)
| Gene name | vapC | Uniprot ID | - |
| Locus tag | PsalN5692_RS19455 | Protein ID | WP_155068989.1 |
| Coordinates | 55923..56330 (-) | Length | 136 a.a. |
Antitoxin (Protein)
| Gene name | vapB | Uniprot ID | E9LHC5 |
| Locus tag | PsalN5692_RS19460 | Protein ID | WP_016210972.1 |
| Coordinates | 56340..56567 (-) | Length | 76 a.a. |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PsalN5692_RS19410 | 51632..51865 | + | 234 | WP_131812062.1 | hypothetical protein | - |
| PsalN5692_RS19415 | 51933..52319 | - | 387 | WP_016212195.1 | type II toxin-antitoxin system VapC family toxin | - |
| PsalN5692_RS19420 | 52316..52561 | - | 246 | WP_016212196.1 | type II toxin-antitoxin system Phd/YefM family antitoxin | - |
| PsalN5692_RS19425 | 52760..53350 | + | 591 | WP_155068987.1 | site-specific integrase | - |
| PsalN5692_RS19430 | 53786..54013 | + | 228 | Protein_69 | IS6 family transposase | - |
| PsalN5692_RS20955 | 53959..54132 | + | 174 | WP_196215544.1 | hypothetical protein | - |
| PsalN5692_RS19435 | 54302..54394 | + | 93 | Protein_71 | DDE-type integrase/transposase/recombinase | - |
| PsalN5692_RS19440 | 54544..54744 | + | 201 | WP_155068988.1 | transposase zinc-binding domain-containing protein | - |
| PsalN5692_RS19445 | 54781..55509 | + | 729 | WP_032126737.1 | IS6 family transposase | - |
| PsalN5692_RS19450 | 55636..55911 | - | 276 | Protein_74 | DNA/RNA non-specific endonuclease | - |
| PsalN5692_RS19455 | 55923..56330 | - | 408 | WP_155068989.1 | DUF4411 family protein | Toxin |
| PsalN5692_RS19460 | 56340..56567 | - | 228 | WP_016210972.1 | AbrB/MazE/SpoVT family DNA-binding domain-containing protein | Antitoxin |
| PsalN5692_RS19465 | 56715..57080 | - | 366 | WP_155069007.1 | hypothetical protein | - |
| PsalN5692_RS19470 | 57222..57695 | - | 474 | WP_155068990.1 | single-stranded DNA-binding protein | - |
| PsalN5692_RS19475 | 57834..58010 | + | 177 | WP_155068991.1 | hypothetical protein | - |
| PsalN5692_RS20960 | 58114..58755 | + | 642 | WP_196215545.1 | transposase zinc-binding domain-containing protein | - |
| PsalN5692_RS20965 | 58734..59240 | + | 507 | WP_196215553.1 | transposase | - |
| PsalN5692_RS19485 | 59393..59578 | + | 186 | WP_155068992.1 | hypothetical protein | - |
| PsalN5692_RS19490 | 59590..60345 | + | 756 | WP_155068993.1 | DDE-type integrase/transposase/recombinase | - |
| PsalN5692_RS19495 | 60416..61543 | - | 1128 | WP_155067589.1 | IS91 family transposase | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Non-Mobilizable plasmid | - | - | 1..75380 | 75380 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 136 a.a. Molecular weight: 15648.04 Da Isoelectric Point: 8.0627
>T123685 WP_155068989.1 NZ_CP039222:c56330-55923 [Piscirickettsia salmonis]
MLYMLDTNICIYLIKQKPRSYYERLMEVEKSRHILAISSIVLSELQFGVARSQHQRKNQEAINTLVNKLEVLPYEEKAAK
YYGDLRTNLQRKGTVIGGNDMIIAAHALSEKAVLVTHNTKEFQRVEHLELEDWAS
MLYMLDTNICIYLIKQKPRSYYERLMEVEKSRHILAISSIVLSELQFGVARSQHQRKNQEAINTLVNKLEVLPYEEKAAK
YYGDLRTNLQRKGTVIGGNDMIIAAHALSEKAVLVTHNTKEFQRVEHLELEDWAS
Download Length: 408 bp
>T123685 NZ_CP039222:c56330-55923 [Piscirickettsia salmonis]
ATGCTTTATATGCTGGATACGAATATTTGTATTTATTTAATTAAACAAAAGCCTCGTTCTTATTATGAGCGTTTGATGGA
AGTAGAAAAATCTCGCCATATATTGGCGATTTCATCGATTGTTTTGTCTGAATTACAGTTCGGGGTGGCTCGCAGTCAAC
ACCAGCGAAAAAACCAGGAAGCAATTAATACCTTAGTAAATAAGCTCGAAGTTTTACCCTATGAGGAAAAGGCAGCTAAA
TACTACGGTGACTTAAGGACTAACCTACAAAGAAAAGGGACGGTGATTGGTGGGAATGATATGATTATAGCCGCACATGC
GCTTTCAGAAAAAGCCGTTTTAGTGACACATAATACAAAAGAGTTTCAGCGCGTCGAGCATTTAGAGCTTGAAGACTGGG
CAAGTTAA
ATGCTTTATATGCTGGATACGAATATTTGTATTTATTTAATTAAACAAAAGCCTCGTTCTTATTATGAGCGTTTGATGGA
AGTAGAAAAATCTCGCCATATATTGGCGATTTCATCGATTGTTTTGTCTGAATTACAGTTCGGGGTGGCTCGCAGTCAAC
ACCAGCGAAAAAACCAGGAAGCAATTAATACCTTAGTAAATAAGCTCGAAGTTTTACCCTATGAGGAAAAGGCAGCTAAA
TACTACGGTGACTTAAGGACTAACCTACAAAGAAAAGGGACGGTGATTGGTGGGAATGATATGATTATAGCCGCACATGC
GCTTTCAGAAAAAGCCGTTTTAGTGACACATAATACAAAAGAGTTTCAGCGCGTCGAGCATTTAGAGCTTGAAGACTGGG
CAAGTTAA
Antitoxin
Download Length: 76 a.a. Molecular weight: 8929.02 Da Isoelectric Point: 4.5679
>AT123685 WP_016210972.1 NZ_CP039222:c56567-56340 [Piscirickettsia salmonis]
MAKSRIFKSGNSQAVRLPKEMRLDGEEVVIHRFGNSLLIQPVYETWMDVYNHMPDVSDDFMEDHQDIQAQERDWF
MAKSRIFKSGNSQAVRLPKEMRLDGEEVVIHRFGNSLLIQPVYETWMDVYNHMPDVSDDFMEDHQDIQAQERDWF
Download Length: 228 bp
>AT123685 NZ_CP039222:c56567-56340 [Piscirickettsia salmonis]
ATGGCAAAATCACGAATTTTTAAAAGTGGTAATTCCCAAGCCGTTCGCTTACCAAAAGAAATGCGGCTCGATGGTGAAGA
GGTGGTTATTCATCGATTTGGCAACTCTTTATTAATCCAGCCAGTTTATGAAACCTGGATGGATGTTTACAACCATATGC
CGGATGTATCGGATGATTTTATGGAAGATCACCAAGATATACAAGCACAAGAACGTGACTGGTTTTAG
ATGGCAAAATCACGAATTTTTAAAAGTGGTAATTCCCAAGCCGTTCGCTTACCAAAAGAAATGCGGCTCGATGGTGAAGA
GGTGGTTATTCATCGATTTGGCAACTCTTTATTAATCCAGCCAGTTTATGAAACCTGGATGGATGTTTACAACCATATGC
CGGATGTATCGGATGATTTTATGGAAGATCACCAAGATATACAAGCACAAGAACGTGACTGGTTTTAG
Similar Proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|