Detailed information of TA system TA123470

Bioinformatically predicted

Overview

TA module

• Type: II
• Classification (family/domain): ataRT/DUF1778(antitoxin)
• Location: 2673111..2673874
• Replicon: chromosome
• Accession: NZ_CP039055
• Organism: Piscirickettsia salmonis strain Psal-098

Toxin (Protein)

• Gene name: ataT
• Uniprot ID: -
• Locus tag: Psal098_RS13545
• Protein ID: WP_144420759.1
• Coordinates: 2673111..2673611 (-)
• Length: 167 a.a.

Antitoxin (Protein)

• Gene name: ataR
• Uniprot ID: A0A1L6TGZ1
• Locus tag: Psal098_RS13550
• Protein ID: WP_017376501.1
• Coordinates: 2673608..2673874 (-)
• Length: 89 a.a.

Genomic Context

Locus tag	Coordinates	Strand	Size (bp)	Protein ID	Product	Description
Psal098_RS13515	2668123..2669238	+	1116	WP_017376001.1	DSD1 family PLP-dependent enzyme	-
Psal098_RS13520	2669401..2669925	+	525	WP_017376000.1	inorganic diphosphatase	-
Psal098_RS13525	2669925..2670455	+	531	WP_017375999.1	transcriptional repressor	-
Psal098_RS13530	2670786..2671025	+	240	WP_075275277.1	transposase zinc-binding domain-containing protein	-
Psal098_RS18595	2670950..2671612	+	663	WP_174872532.1	transposase	-
Psal098_RS18600	2671616..2671921	+	306	WP_146619445.1	transposase	-
Psal098_RS13540	2672115..2672990	+	876	WP_048875904.1	IS982 family transposase	-
Psal098_RS13545	2673111..2673611	-	501	WP_144420759.1	GNAT family N-acetyltransferase	Toxin
Psal098_RS13550	2673608..2673874	-	267	WP_017376501.1	DUF1778 domain-containing protein	Antitoxin
Psal098_RS13555	2674040..2675014	-	975	WP_048875903.1	IS30 family transposase	-
Psal098_RS13560	2675194..2675814	-	621	WP_075275269.1	transposase	-
Psal098_RS13565	2675811..2676107	-	297	Protein_2661	transposase	-
Psal098_RS13570	2676121..2677524	-	1404	WP_048876031.1	IS4 family transposase	-
Psal098_RS13575	2677648..2678235	-	588	Protein_2663	IS982-like element ISPsa1 family transposase	-

Associated MGEs

MGE detail	Similar MGEs	Relative position	MGE Type	Cargo ARG	Virulence gene	Coordinates	Length (bp)
	-	inside	IScluster/Tn	-	-	2672115..2678235	6120

Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.

Domains

Predicted by InterproScan

Toxin

• GNAT domain (67-143)

Antitoxin

• Vibrio phage ICP1, Orf50 (7-81)

Sequences

Toxin

Protein

• Length: 167 a.a.
• Molecular weight: 18558.59 Da
• Isoelectric Point: 9.0858

>T123470 WP_144420759.1 NZ_CP039055:c2673611-2673111 [Piscirickettsia salmonis]
ITPPELLESSHDTRGFDCGDIALNEWLQKRGLKNQTSDASRVYVITNRHRVIGYYALASGSVERMIVPGSIARNMPETIP
VIVLGRLAVDLDYHDQKLGSGLLKDALIRCMLAADTIAAKAVMVHAISDRAKQFYTKNSFVQCPEIEMTLFISIKKIRQL
LKNETK

Nucleotide

• Length: 501 bp

>T123470 NZ_CP039055:c2673611-2673111 [Piscirickettsia salmonis]
ATAACACCGCCGGAGCTGCTAGAGTCTAGCCATGATACTCGAGGTTTTGATTGCGGAGATATTGCGCTTAATGAGTGGTT
ACAAAAGCGAGGATTAAAAAATCAGACCTCTGATGCAAGTCGAGTGTATGTAATTACTAATCGTCATCGAGTGATTGGCT
ATTATGCGTTAGCCAGTGGCTCTGTGGAGCGAATGATCGTACCTGGCTCCATAGCTCGTAATATGCCAGAGACAATTCCG
GTGATTGTGCTAGGGCGGCTAGCCGTTGACCTTGATTATCACGATCAAAAACTAGGAAGCGGCTTATTAAAAGATGCTTT
AATTCGGTGTATGCTAGCTGCTGATACAATCGCTGCAAAGGCAGTCATGGTTCATGCAATCTCAGATAGAGCAAAACAGT
TTTATACTAAAAACTCTTTTGTCCAATGTCCTGAAATTGAAATGACTTTATTTATTTCTATAAAAAAAATTAGGCAACTT
CTAAAAAATGAAACAAAATAA

Antitoxin

Protein

• Length: 89 a.a.
• Molecular weight: 10033.51 Da
• Isoelectric Point: 4.4819

>AT123470 WP_017376501.1 NZ_CP039055:c2673874-2673608 [Piscirickettsia salmonis]
MAKVTPISMRTTAEQFDLLTKAANALNIDRTSFILNIACREAENVLLDRRLFQLNDEAFDAFEAALDEPLTQPEKLKRLL
TEPAPWEK

Nucleotide

• Length: 267 bp

>AT123470 NZ_CP039055:c2673874-2673608 [Piscirickettsia salmonis]
ATGGCAAAGGTAACACCGATTAGCATGCGTACAACAGCGGAACAGTTTGATTTACTTACTAAAGCAGCAAATGCATTAAA
TATAGACCGCACATCGTTCATTTTGAATATTGCTTGCCGTGAAGCTGAAAACGTACTGCTAGACCGCCGTTTGTTTCAAT
TAAATGATGAAGCTTTTGATGCCTTTGAGGCAGCACTAGATGAGCCATTAACTCAACCAGAGAAATTAAAACGCTTACTA
ACGGAGCCTGCACCTTGGGAGAAATAA

Structures

Antitoxin

• AlphaFold DB: A0A1L6TGZ1