Detailed information of TA system TA123396

Bioinformatically predicted

Overview

TA module

• Type: II
• Classification (family/domain): mazEF/PRK09907-MazE
• Location: 177101..177671
• Replicon: plasmid unnamed1
• Accession: NZ_CP038953
• Organism: Piscirickettsia salmonis strain Psal-040

Toxin (Protein)

• Gene name: mazF
• Uniprot ID: -
• Locus tag: Psal040_RS17405
• Protein ID: WP_036781349.1
• Coordinates: 177345..177671 (+)
• Length: 109 a.a.

Antitoxin (Protein)

• Gene name: mazE
• Uniprot ID: -
• Locus tag: Psal040_RS17400
• Protein ID: WP_016212365.1
• Coordinates: 177101..177343 (+)
• Length: 81 a.a.

Genomic Context

Locus tag	Coordinates	Strand	Size (bp)	Protein ID	Product	Description
Psal040_RS17375	172942..173673	-	732	WP_016212311.1	hypothetical protein	-
Psal040_RS17385	173794..175377	-	1584	WP_052047129.1	protein kinase	-
Psal040_RS17390	175660..176388	-	729	WP_075274745.1	IS6-like element ISPsa2 family transposase	-
Psal040_RS17395	176456..176896	-	441	Protein_223	tyrosine-type recombinase/integrase	-
Psal040_RS17400	177101..177343	+	243	WP_016212365.1	antidote-toxin recognition MazE family protein	Antitoxin
Psal040_RS17405	177345..177671	+	327	WP_036781349.1	type II toxin-antitoxin system PemK/MazF family toxin	Toxin
Psal040_RS17410	177787..178515	+	729	WP_054300202.1	IS6 family transposase	-
Psal040_RS17415	178985..179368	+	384	WP_016212152.1	hypothetical protein	-
Psal040_RS17420	179675..180052	-	378	WP_016212154.1	DDE-type integrase/transposase/recombinase	-
Psal040_RS17425	180217..180549	-	333	WP_155047283.1	transposase	-
Psal040_RS17435	180738..181517	-	780	WP_081377351.1	transposase	-
Psal040_RS17440	181618..181875	-	258	Protein_231	DDE-type integrase/transposase/recombinase	-
Psal040_RS18720	182164..182283	-	120	Protein_232	IS6 family transposase	-

Associated MGEs

MGE detail	Similar MGEs	Relative position	MGE Type	Cargo ARG	Virulence gene	Coordinates	Length (bp)
	-	inside	Non-Mobilizable plasmid	-	-	1..194899	194899
	-	inside	IScluster/Tn	-	-	172054..189329	17275

Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.

Domains

Predicted by InterproScan

Toxin

• mRNA interferase PemK-like (3-104)

Antitoxin

• Antitoxin PemI-like (1-77)

Sequences

Toxin

Protein

• Length: 109 a.a.
• Molecular weight: 11971.89 Da
• Isoelectric Point: 10.1733

>T123396 WP_036781349.1 NZ_CP038953:177345-177671 [Piscirickettsia salmonis]
VPERGDIIFLSLDPTLGSEQRGNRPFLVLTSKPYNLKVGLVTGCPVTSKIKGYPFEVELPKNNSVHGAVLVNQLTTKDFR
ARGWNHADKLDKKSLERVQGLIDVMLKG

Nucleotide

• Length: 327 bp

>T123396 NZ_CP038953:177345-177671 [Piscirickettsia salmonis]
GTGCCTGAACGTGGTGATATTATTTTTCTTAGTTTAGACCCTACATTAGGTAGTGAACAAAGAGGAAACCGACCCTTTTT
AGTGTTGACTTCCAAGCCCTATAACTTAAAGGTGGGACTTGTGACGGGGTGCCCGGTTACTTCAAAGATTAAAGGATATC
CTTTTGAAGTTGAGCTACCTAAAAACAATAGCGTTCACGGAGCAGTGTTGGTTAACCAACTAACAACAAAAGATTTCCGT
GCTAGGGGCTGGAATCATGCTGATAAGCTCGATAAAAAATCTCTTGAAAGAGTTCAGGGGCTAATTGATGTGATGTTGAA
AGGTTAA

Antitoxin

Protein

• Length: 81 a.a.
• Molecular weight: 8950.09 Da
• Isoelectric Point: 4.4750

>AT123396 WP_016212365.1 NZ_CP038953:177101-177343 [Piscirickettsia salmonis]
MDAVVRKWGNSLGLLLPLSIARELHINDGSHVTIDKVGDEIHIKPLTHTQTLELLLSEITPENSHDLVDWGEELGGERFE

Nucleotide

• Length: 243 bp

>AT123396 NZ_CP038953:177101-177343 [Piscirickettsia salmonis]
ATGGATGCAGTTGTTAGAAAATGGGGGAATAGCTTGGGGTTGTTGCTACCCTTGAGCATCGCACGTGAACTTCATATCAA
TGATGGTAGTCATGTGACGATTGATAAGGTCGGGGATGAGATTCACATTAAACCTTTGACTCATACGCAGACCCTTGAAT
TATTATTATCAGAAATTACCCCTGAAAATAGTCATGATTTAGTAGATTGGGGTGAAGAATTAGGAGGGGAGCGCTTTGAA
TAA