Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2002103..2002374 | Replicon | chromosome |
| Accession | NZ_CP038859 | ||
| Organism | Escherichia coli strain 357900 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2002141..2002244 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2002103..2002374 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| A7A13_RS09620 | 1999260..2000699 | + | 1440 | WP_176670748.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| A7A13_RS09625 | 2000817..2001053 | + | 237 | WP_001295499.1 | DUF1480 family protein | - |
| A7A13_RS09630 | 2001158..2001349 | + | 192 | WP_001296140.1 | YebW family protein | - |
| A7A13_RS09635 | 2001350..2002006 | - | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| - | 2002103..2002374 | + | 272 | - | - | Antitoxin |
| - | 2002141..2002244 | - | 104 | - | - | Toxin |
| A7A13_RS09640 | 2002402..2002743 | - | 342 | WP_000976492.1 | YebY family protein | - |
| A7A13_RS09645 | 2002756..2003628 | - | 873 | WP_000879280.1 | copper homeostasis membrane protein CopD | - |
| A7A13_RS09650 | 2003632..2004006 | - | 375 | WP_000204699.1 | CopC domain-containing protein YobA | - |
| A7A13_RS09655 | 2004145..2004375 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| A7A13_RS09660 | 2004477..2005133 | + | 657 | WP_000011652.1 | carbon-nitrogen hydrolase family protein | - |
| A7A13_RS09665 | 2005157..2005819 | + | 663 | WP_176670750.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T123291 NZ_CP038859:c2002244-2002141 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT123291 NZ_CP038859:2002103-2002374 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCTTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCTTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
