Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1979521..1979792 | Replicon | chromosome |
| Accession | NZ_CP038857 | ||
| Organism | Escherichia coli strain PigCaeca_2 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1979651..1979754 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1979521..1979792 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| E5285_RS09515 | 1976076..1976738 | - | 663 | WP_000944258.1 | exodeoxyribonuclease X | - |
| E5285_RS09520 | 1976762..1977418 | - | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein | - |
| E5285_RS09525 | 1977520..1977750 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| E5285_RS09530 | 1977889..1978263 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| E5285_RS09535 | 1978267..1979139 | + | 873 | WP_000879295.1 | copper homeostasis membrane protein CopD | - |
| E5285_RS09540 | 1979152..1979493 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 1979521..1979792 | - | 272 | - | - | Antitoxin |
| - | 1979651..1979754 | + | 104 | - | - | Toxin |
| E5285_RS09545 | 1979889..1980545 | + | 657 | WP_000812732.1 | protein-serine/threonine phosphatase | - |
| E5285_RS09550 | 1980546..1980737 | - | 192 | WP_001338167.1 | YebW family protein | - |
| E5285_RS09555 | 1980842..1981078 | - | 237 | WP_001338166.1 | DUF1480 family protein | - |
| E5285_RS09560 | 1981196..1982635 | - | 1440 | WP_001351758.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T123261 NZ_CP038857:1979651-1979754 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT123261 NZ_CP038857:c1979792-1979521 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
