Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1941077..1941312 | Replicon | chromosome |
| Accession | NZ_CP038856 | ||
| Organism | Citrobacter freundii strain Upstream_1 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1941203..1941306 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1941077..1941312 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| E5284_RS09110 | 1937623..1938285 | - | 663 | WP_096756686.1 | exodeoxyribonuclease X | - |
| E5284_RS09115 | 1938309..1938965 | - | 657 | WP_115258187.1 | carbon-nitrogen hydrolase family protein | - |
| E5284_RS09120 | 1939072..1939296 | - | 225 | WP_096756688.1 | DNA polymerase III subunit theta | - |
| E5284_RS09125 | 1939441..1939815 | + | 375 | WP_135911868.1 | CopC domain-containing protein YobA | - |
| E5284_RS09130 | 1939820..1940692 | + | 873 | WP_135911869.1 | copper homeostasis membrane protein CopD | - |
| E5284_RS09135 | 1940709..1941047 | + | 339 | WP_115258191.1 | YebY family protein | - |
| - | 1941077..1941312 | - | 236 | - | - | Antitoxin |
| - | 1941203..1941306 | + | 104 | - | - | Toxin |
| E5284_RS09140 | 1941461..1942102 | + | 642 | WP_115258234.1 | protein-serine/threonine phosphatase | - |
| E5284_RS09145 | 1942103..1942294 | - | 192 | WP_045444034.1 | YebW family protein | - |
| E5284_RS09150 | 1942397..1942633 | - | 237 | WP_161959030.1 | DUF1480 family protein | - |
| E5284_RS09155 | 1942734..1944122 | - | 1389 | WP_210424348.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T123242 NZ_CP038856:1941203-1941306 [Citrobacter freundii]
GGCAGGGTAACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAGGGTAACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 236 bp
>AT123242 NZ_CP038856:c1941312-1941077 [Citrobacter freundii]
ACAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGT
TGGCATTAATGCAGGCTAAGTTACCCTGCCATTTAAGAATAGATGACAGCGCCAGGTTTTCCAGTCCGCGACCAAAGTGG
CCTGAAAAAAAGGACGATTGTCACCAGCTAGAATGCAAAAACAGCAAGTTCTGCAGCCAGAACGTTGCGGTTTTTT
ACAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGT
TGGCATTAATGCAGGCTAAGTTACCCTGCCATTTAAGAATAGATGACAGCGCCAGGTTTTCCAGTCCGCGACCAAAGTGG
CCTGAAAAAAAGGACGATTGTCACCAGCTAGAATGCAAAAACAGCAAGTTCTGCAGCCAGAACGTTGCGGTTTTTT
