Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 3600316..3600587 | Replicon | chromosome |
| Accession | NZ_CP038791 | ||
| Organism | Escherichia coli strain PF9285 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 3600354..3600455 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 3600316..3600587 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| E5M00_RS17925 | 3597473..3598912 | + | 1440 | WP_001351758.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| E5M00_RS17930 | 3599030..3599266 | + | 237 | WP_001338166.1 | DUF1480 family protein | - |
| E5M00_RS17935 | 3599371..3599562 | + | 192 | WP_001338167.1 | YebW family protein | - |
| E5M00_RS17940 | 3599563..3600219 | - | 657 | WP_001556660.1 | protein-serine/threonine phosphatase | - |
| - | 3600316..3600587 | + | 272 | - | - | Antitoxin |
| - | 3600354..3600455 | - | 102 | - | - | Toxin |
| E5M00_RS17945 | 3600615..3600956 | - | 342 | WP_000976472.1 | YebY family protein | - |
| E5M00_RS17950 | 3600969..3601841 | - | 873 | WP_000879295.1 | copper homeostasis membrane protein CopD | - |
| E5M00_RS17955 | 3601845..3602219 | - | 375 | WP_135798791.1 | CopC domain-containing protein YobA | - |
| E5M00_RS17960 | 3602358..3602588 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| E5M00_RS17965 | 3602690..3603346 | + | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein | - |
| E5M00_RS17970 | 3603370..3604032 | + | 663 | WP_001556661.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 102 bp
>T123146 NZ_CP038791:c3600455-3600354 [Escherichia coli]
CAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACAG
GAATCGTGTTCGGTCTCTTTTT
CAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACAG
GAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT123146 NZ_CP038791:3600316-3600587 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGTCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGTCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
