Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2029697..2029837 | Replicon | chromosome |
| Accession | NZ_CP038662 | ||
| Organism | Serratia nematodiphila strain DH-S01 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2029741..2029837 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2029697..2029837 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| E5D60_RS09640 | 2024965..2025360 | + | 396 | WP_033633335.1 | RidA family protein | - |
| E5D60_RS09645 | 2025517..2026470 | + | 954 | WP_004928848.1 | prolyl aminopeptidase | - |
| E5D60_RS09650 | 2026502..2026732 | - | 231 | WP_016928156.1 | DNA polymerase III subunit theta | - |
| E5D60_RS09655 | 2027077..2027595 | + | 519 | WP_015377481.1 | non-heme ferritin | - |
| E5D60_RS09660 | 2027888..2028304 | + | 417 | WP_046686875.1 | CopC domain-containing protein YobA | - |
| E5D60_RS09665 | 2028307..2029188 | + | 882 | WP_033633334.1 | copper homeostasis membrane protein CopD | - |
| E5D60_RS09670 | 2029258..2029599 | + | 342 | WP_033633333.1 | YebY family protein | - |
| - | 2029697..2029837 | - | 141 | - | - | Antitoxin |
| - | 2029741..2029837 | + | 97 | - | - | Toxin |
| E5D60_RS09675 | 2029883..2030971 | - | 1089 | WP_135638008.1 | tyrosine-type recombinase/integrase | - |
| E5D60_RS09680 | 2031091..2031309 | - | 219 | WP_071844562.1 | ogr/Delta-like zinc finger family protein | - |
| E5D60_RS09685 | 2031383..2032480 | - | 1098 | WP_135638010.1 | phage late control D family protein | - |
| E5D60_RS09690 | 2032477..2032941 | - | 465 | WP_135638012.1 | phage tail protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 2021679..2065644 | 43965 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 97 bp
>T123101 NZ_CP038662:2029741-2029837 [Serratia nematodiphila]
AACAAGCCCTGCATTAAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTAGACCGAATATAGGAATC
GTATTCGGTCTTTTTTT
AACAAGCCCTGCATTAAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTAGACCGAATATAGGAATC
GTATTCGGTCTTTTTTT
Antitoxin
Download Length: 141 bp
>AT123101 NZ_CP038662:c2029837-2029697 [Serratia nematodiphila]
AAAAAAAGACCGAATACGATTCCTATATTCGGTCTAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCAT
TTAATGCAGGGCTTGTTCAGCCGTGCACTTTAAGAGTAGCCTACCGCGCCAGTTTTGCCAG
AAAAAAAGACCGAATACGATTCCTATATTCGGTCTAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCAT
TTAATGCAGGGCTTGTTCAGCCGTGCACTTTAAGAGTAGCCTACCGCGCCAGTTTTGCCAG
