Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2198412..2198683 | Replicon | chromosome |
| Accession | NZ_CP038505 | ||
| Organism | Escherichia coli strain 28Eco12 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2198542..2198645 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2198412..2198683 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| DC440_RS10730 | 2194967..2195629 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| DC440_RS10735 | 2195653..2196309 | - | 657 | WP_000011653.1 | carbon-nitrogen hydrolase family protein | - |
| DC440_RS10740 | 2196411..2196641 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| DC440_RS10745 | 2196780..2197154 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| DC440_RS10750 | 2197158..2198030 | + | 873 | WP_001551232.1 | copper homeostasis membrane protein CopD | - |
| DC440_RS10755 | 2198043..2198384 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 2198412..2198683 | - | 272 | - | - | Antitoxin |
| - | 2198542..2198645 | + | 104 | - | - | Toxin |
| DC440_RS10760 | 2198780..2199436 | + | 657 | WP_001551231.1 | protein-serine/threonine phosphatase | - |
| DC440_RS10765 | 2199437..2199628 | - | 192 | WP_001296140.1 | YebW family protein | - |
| DC440_RS10770 | 2199733..2199969 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
| DC440_RS10775 | 2200087..2201526 | - | 1440 | WP_024186439.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 2191102..2214523 | 23421 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T123034 NZ_CP038505:2198542-2198645 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT123034 NZ_CP038505:c2198683-2198412 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGCCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGCCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
