Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2361852..2361934 | Replicon | chromosome |
| Accession | NZ_CP038499 | ||
| Organism | Dickeya dianthicola strain LAR.16.03.LID | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2361854..2361934 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2361852..2361934 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| E4659_RS10885 (E4659_11030) | 2357292..2357516 | - | 225 | WP_024105836.1 | hypothetical protein | - |
| E4659_RS10890 (E4659_11035) | 2357853..2358254 | + | 402 | WP_024105837.1 | hypothetical protein | - |
| E4659_RS22535 (E4659_11040) | 2358407..2358535 | + | 129 | WP_029729479.1 | hypothetical protein | - |
| E4659_RS10895 (E4659_11045) | 2358800..2359405 | + | 606 | WP_024105838.1 | hypothetical protein | - |
| E4659_RS10900 (E4659_11050) | 2359545..2359778 | + | 234 | WP_024105839.1 | hypothetical protein | - |
| E4659_RS10905 (E4659_11055) | 2360002..2360160 | - | 159 | WP_162928372.1 | hypothetical protein | - |
| E4659_RS10910 (E4659_11060) | 2360668..2361174 | + | 507 | WP_144414575.1 | hypothetical protein | - |
| - | 2361852..2361934 | + | 83 | - | - | Antitoxin |
| - | 2361854..2361934 | - | 81 | - | - | Toxin |
| E4659_RS10915 (E4659_11070) | 2362104..2362442 | - | 339 | WP_024105843.1 | YebY family protein | - |
| E4659_RS10920 (E4659_11075) | 2362916..2363332 | + | 417 | WP_046830401.1 | hypothetical protein | - |
| E4659_RS10925 (E4659_11080) | 2363664..2363912 | + | 249 | WP_024105845.1 | GlsB/YeaQ/YmgE family stress response membrane protein | - |
| E4659_RS10930 (E4659_11085) | 2364174..2365448 | - | 1275 | WP_024105846.1 | YeaH/YhbH family protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Genomic island | - | - | 2350364..2363912 | 13548 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 81 bp
>T123005 NZ_CP038499:c2361934-2361854 [Dickeya dianthicola]
AATGCCAACTTTTAGCGCACGGCTCTCTCCAAAGAGCCATTTCCCTAGACCGGGCACAGGAATCGTGTTCGGTCTTTTTT
T
AATGCCAACTTTTAGCGCACGGCTCTCTCCAAAGAGCCATTTCCCTAGACCGGGCACAGGAATCGTGTTCGGTCTTTTTT
T
Antitoxin
Download Length: 83 bp
>AT123005 NZ_CP038499:2361852-2361934 [Dickeya dianthicola]
ATAAAAAAAGACCGAACACGATTCCTGTGCCCGGTCTAGGGAAATGGCTCTTTGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATT
ATAAAAAAAGACCGAACACGATTCCTGTGCCCGGTCTAGGGAAATGGCTCTTTGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATT
