Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type IV Classification (family/domain) cptAB/Cpta(toxin)
Location 4560611..4561265 Replicon chromosome
Accession NZ_CP038496
Organism Escherichia coli O157:H7 strain TT12A

Toxin (Protein)


Gene name cptA Uniprot ID S1PAM6
Locus tag E5F08_RS22575 Protein ID WP_000244781.1
Coordinates 4560611..4561018 (-) Length 136 a.a.

Antitoxin (Protein)


Gene name cptB Uniprot ID S1PPB1
Locus tag E5F08_RS22580 Protein ID WP_000354046.1
Coordinates 4560999..4561265 (-) Length 89 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
E5F08_RS22555 4556568..4558301 - 1734 WP_000813185.1 single-stranded-DNA-specific exonuclease RecJ -
E5F08_RS22560 4558307..4559017 - 711 WP_000715214.1 bifunctional protein-disulfide isomerase/oxidoreductase DsbC -
E5F08_RS22565 4559042..4559938 - 897 WP_000806640.1 site-specific tyrosine recombinase XerD -
E5F08_RS22570 4560050..4560571 + 522 WP_001055874.1 flavodoxin FldB -
E5F08_RS22575 4560611..4561018 - 408 WP_000244781.1 protein YgfX Toxin
E5F08_RS22580 4560999..4561265 - 267 WP_000354046.1 FAD assembly factor SdhE Antitoxin
E5F08_RS22585 4561508..4562488 + 981 WP_000886053.1 tRNA-modifying protein YgfZ -
E5F08_RS22590 4562565..4563224 - 660 WP_000250274.1 hemolysin III family protein -
E5F08_RS22595 4563388..4563699 - 312 WP_001182957.1 N(4)-acetylcytidine aminohydrolase -
E5F08_RS22600 4563744..4565177 + 1434 WP_001310226.1 6-phospho-beta-glucosidase BglA -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Inner membrane protein YgfX

(3-131)

Antitoxin

Flavinator of succinate dehydrogenase

(7-79)


Sequences

Toxin        


Download         Length: 136 a.a.        Molecular weight: 16061.99 Da        Isoelectric Point: 11.5202

>T122974 WP_000244781.1 NZ_CP038496:c4561018-4560611 [Escherichia coli O157:H7]
VVLWQSDLRVSWRAQWLSLLIHGLVAAVILLMPWPLSYTPLWMVLLSLVVFDCVRSQRRINARQGEIRLLMDGRLRWQGQ
EWSIVKAPWMIKSGMMLRLRSDSGKRQHLWLAADSMDEAEWRDLRRILLQQETQR

Download         Length: 408 bp

>T122974 NZ_CP038496:c4561018-4560611 [Escherichia coli O157:H7]
GTGGTCCTGTGGCAATCTGATTTGCGCGTCTCCTGGCGCGCACAGTGGCTTTCCTTGCTGATTCATGGGCTGGTTGCCGC
TGTTATTTTACTCATGCCCTGGCCGCTCAGTTACACCCCGTTATGGATGGTGTTACTTTCGCTGGTGGTGTTTGATTGCG
TTCGCAGCCAGCGGCGTATTAATGCTCGCCAGGGGGAAATTCGCTTGTTGATGGACGGGCGTTTGCGTTGGCAAGGGCAG
GAGTGGAGCATCGTCAAAGCGCCGTGGATGATTAAGAGCGGCATGATGCTGCGTTTACGTTCTGATAGCGGTAAACGGCA
ACATTTATGGCTGGCAGCCGACAGCATGGACGAAGCCGAATGGCGGGATTTACGGCGGATTTTGTTGCAACAAGAGACGC
AAAGATAA

Antitoxin


Download         Length: 89 a.a.        Molecular weight: 10547.12 Da        Isoelectric Point: 5.1599

>AT122974 WP_000354046.1 NZ_CP038496:c4561265-4560999 [Escherichia coli O157:H7]
MDINNKARIHWACRRGMRELDISIMPFFEHEYDSLSDDEKRIFIRLLECDDPDLFNWLMNHGKPADAELEMMVRLIQTRN
RERGPVAI

Download         Length: 267 bp

>AT122974 NZ_CP038496:c4561265-4560999 [Escherichia coli O157:H7]
ATGGACATTAACAACAAAGCCCGCATTCATTGGGCATGCCGCCGTGGTATGCGCGAACTCGATATTTCAATCATGCCGTT
TTTCGAACATGAGTATGACAGCTTAAGCGATGACGAAAAACGCATCTTTATTCGTCTGCTGGAATGTGACGATCCCGATC
TGTTTAACTGGCTGATGAATCACGGTAAACCGGCCGATGCAGAACTGGAAATGATGGTCCGACTCATCCAGACACGGAAC
CGGGAACGTGGTCCTGTGGCAATCTGA

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
AlphaFold DB S1PAM6

Antitoxin

Source ID Structure
PDB 6B58
PDB 1X6I
PDB 1X6J
PDB 6C12
AlphaFold DB A0A7U9QD57

References