Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 3263291..3263562 | Replicon | chromosome |
| Accession | NZ_CP038496 | ||
| Organism | Escherichia coli O157:H7 strain TT12A | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 3263329..3263432 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 3263291..3263562 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| E5F08_RS16050 | 3260448..3261887 | + | 1440 | WP_001302304.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| E5F08_RS16055 | 3262005..3262241 | + | 237 | WP_001295499.1 | DUF1480 family protein | - |
| E5F08_RS16060 | 3262346..3262537 | + | 192 | WP_001296140.1 | YebW family protein | - |
| E5F08_RS16065 | 3262538..3263194 | - | 657 | WP_000812736.1 | protein-serine/threonine phosphatase | - |
| - | 3263291..3263562 | + | 272 | - | - | Antitoxin |
| - | 3263329..3263432 | - | 104 | - | - | Toxin |
| E5F08_RS16070 | 3263590..3263931 | - | 342 | WP_000976483.1 | YebY family protein | - |
| E5F08_RS16075 | 3263944..3264816 | - | 873 | WP_000879314.1 | copper homeostasis membrane protein CopD | - |
| E5F08_RS16080 | 3264820..3265194 | - | 375 | WP_000168751.1 | CopC domain-containing protein YobA | - |
| E5F08_RS16085 | 3265333..3265563 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| E5F08_RS16090 | 3265665..3266321 | + | 657 | WP_000011656.1 | carbon-nitrogen hydrolase family protein | - |
| E5F08_RS16095 | 3266345..3267007 | + | 663 | WP_000944243.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T122965 NZ_CP038496:c3263432-3263329 [Escherichia coli O157:H7]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT122965 NZ_CP038496:3263291-3263562 [Escherichia coli O157:H7]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
