Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 4706538..4706683 | Replicon | chromosome |
| Accession | NZ_CP038471 | ||
| Organism | Enterobacter roggenkampii strain BP10374 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 4706545..4706648 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 4706538..4706683 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| E4005_RS22765 | 4701753..4703201 | + | 1449 | WP_209442429.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| E4005_RS22770 | 4703308..4703547 | + | 240 | WP_008500472.1 | YebV family protein | - |
| E4005_RS22775 | 4703582..4704226 | - | 645 | WP_135346443.1 | protein-serine/threonine phosphatase | - |
| E4005_RS22780 | 4704393..4705334 | + | 942 | WP_135346444.1 | VirK/YbjX family protein | - |
| E4005_RS22785 | 4705641..4706132 | - | 492 | WP_023293949.1 | hypothetical protein | - |
| - | 4706538..4706683 | + | 146 | - | - | Antitoxin |
| - | 4706545..4706648 | - | 104 | - | - | Toxin |
| E4005_RS22800 | 4706787..4707125 | - | 339 | WP_008500468.1 | YebY family protein | - |
| E4005_RS22805 | 4707142..4708011 | - | 870 | WP_135346445.1 | copper homeostasis membrane protein CopD | - |
| E4005_RS22810 | 4708013..4708384 | - | 372 | WP_135346446.1 | CopC domain-containing protein YobA | - |
| E4005_RS22815 | 4708522..4708752 | + | 231 | WP_008500465.1 | DNA polymerase III subunit theta | - |
| E4005_RS22820 | 4708863..4709513 | + | 651 | WP_095428330.1 | carbon-nitrogen hydrolase family protein | - |
| E4005_RS22825 | 4709538..4710200 | + | 663 | WP_008500463.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T122912 NZ_CP038471:c4706648-4706545 [Enterobacter roggenkampii]
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT122912 NZ_CP038471:4706538-4706683 [Enterobacter roggenkampii]
AACAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCCTTTTAAGAATAGATGACGACGCCAGGTTTTCCAGT
AACAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCCTTTTAAGAATAGATGACGACGCCAGGTTTTCCAGT
