Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1424460..1424694 | Replicon | chromosome |
| Accession | NZ_CP038469 | ||
| Organism | Citrobacter tructae strain SNU WT2 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1424465..1424568 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1424460..1424694 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| E4Z61_RS07555 | 1421152..1422192 | + | 1041 | WP_135322229.1 | recombinase RecT | - |
| E4Z61_RS07560 | 1422227..1422571 | + | 345 | WP_135322230.1 | hypothetical protein | - |
| E4Z61_RS07565 | 1422564..1422767 | + | 204 | WP_003841645.1 | hypothetical protein | - |
| E4Z61_RS07570 | 1422754..1422996 | + | 243 | WP_135322231.1 | DUF4060 family protein | - |
| E4Z61_RS07575 | 1423061..1423333 | + | 273 | WP_135322232.1 | excisionase | - |
| E4Z61_RS07580 | 1423302..1424387 | + | 1086 | WP_135322233.1 | phage integrase Arm DNA-binding domain-containing protein | - |
| - | 1424460..1424694 | + | 235 | - | - | Antitoxin |
| - | 1424465..1424568 | - | 104 | - | - | Toxin |
| E4Z61_RS07585 | 1424724..1425062 | - | 339 | WP_135322234.1 | YebY family protein | - |
| E4Z61_RS07590 | 1425079..1425951 | - | 873 | WP_135322235.1 | copper homeostasis membrane protein CopD | - |
| E4Z61_RS07595 | 1425956..1426330 | - | 375 | WP_135322236.1 | CopC domain-containing protein YobA | - |
| E4Z61_RS07600 | 1426475..1426699 | + | 225 | WP_135322237.1 | DNA polymerase III subunit theta | - |
| E4Z61_RS07605 | 1426806..1427462 | + | 657 | WP_135322238.1 | carbon-nitrogen hydrolase family protein | - |
| E4Z61_RS07610 | 1427486..1428148 | + | 663 | WP_135322239.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 1366043..1446279 | 80236 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T122896 NZ_CP038469:c1424568-1424465 [Citrobacter tructae]
GGCAGGGTAACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAGGGTAACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 235 bp
>AT122896 NZ_CP038469:1424460-1424694 [Citrobacter tructae]
CACATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTAAGTTACCCTGCCATTTAAGAATAGATGACAGCGCCAGGTTTTCCAGTCCGCGACCAAAGTGGC
CTGAAAAAAAGGACGATTGTCACCCGCTACAACGCAAAAACCGCAAGTTCTTCTGCAAGAACGTTGCGGTTTTTT
CACATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTAAGTTACCCTGCCATTTAAGAATAGATGACAGCGCCAGGTTTTCCAGTCCGCGACCAAAGTGGC
CTGAAAAAAAGGACGATTGTCACCCGCTACAACGCAAAAACCGCAAGTTCTTCTGCAAGAACGTTGCGGTTTTTT
