Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2064278..2064549 | Replicon | chromosome |
| Accession | NZ_CP038453 | ||
| Organism | Escherichia coli strain EC-129 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2064408..2064511 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2064278..2064549 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| E4Z89_RS09935 | 2060833..2061495 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| E4Z89_RS09940 | 2061519..2062175 | - | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein | - |
| E4Z89_RS09945 | 2062277..2062507 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| E4Z89_RS09950 | 2062646..2063020 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| E4Z89_RS09955 | 2063024..2063896 | + | 873 | WP_042346164.1 | copper homeostasis membrane protein CopD | - |
| E4Z89_RS09960 | 2063909..2064250 | + | 342 | WP_000976476.1 | YebY family protein | - |
| - | 2064278..2064549 | - | 272 | - | - | Antitoxin |
| - | 2064408..2064511 | + | 104 | - | - | Toxin |
| E4Z89_RS09965 | 2064646..2065302 | + | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| E4Z89_RS09970 | 2065303..2065494 | - | 192 | WP_000457842.1 | YebW family protein | - |
| E4Z89_RS09975 | 2065599..2065835 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
| E4Z89_RS09980 | 2065953..2067392 | - | 1440 | WP_001352260.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T122817 NZ_CP038453:2064408-2064511 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT122817 NZ_CP038453:c2064549-2064278 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
