Detailed information of TA system
Bioinformatically predictedOverview
TA module
Type | II | Classification (family/domain) | paaR-paaA-parE/- |
Location | 950847..951325 | Replicon | chromosome |
Accession | NZ_CP038428 | ||
Organism | Escherichia coli O157:H7 strain 611 |
Toxin (Protein)
Gene name | parE_1 | Uniprot ID | A0A891SFN9 |
Locus tag | E3149_RS04475 | Protein ID | WP_001303876.1 |
Coordinates | 950847..951134 (-) | Length | 96 a.a. |
Antitoxin (Protein)
Gene name | paaA | Uniprot ID | Q8XD67 |
Locus tag | E3149_RS04480 | Protein ID | WP_000536233.1 |
Coordinates | 951134..951325 (-) | Length | 64 a.a. |
Genomic Context
Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
---|---|---|---|---|---|---|
E3149_RS04445 | 945996..948467 | - | 2472 | WP_000034474.1 | exonuclease | - |
E3149_RS04450 | 948561..948752 | - | 192 | WP_001098307.1 | DUF1482 family protein | - |
E3149_RS04455 | 948749..948937 | - | 189 | WP_000413705.1 | cell division inhibition protein DicB | - |
E3149_RS04460 | 949511..949696 | + | 186 | WP_001133046.1 | hypothetical protein | - |
E3149_RS04465 | 949883..950272 | - | 390 | WP_000394511.1 | hypothetical protein | - |
E3149_RS04470 | 950414..950569 | - | 156 | WP_000379575.1 | DUF1391 family protein | - |
E3149_RS04475 | 950847..951134 | - | 288 | WP_001303876.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin |
E3149_RS04480 | 951134..951325 | - | 192 | WP_000536233.1 | hypothetical protein | Antitoxin |
E3149_RS04485 | 951353..951754 | - | 402 | WP_000986592.1 | helix-turn-helix domain-containing protein | - |
E3149_RS04490 | 951863..952135 | + | 273 | WP_000887453.1 | helix-turn-helix domain-containing protein | - |
E3149_RS04495 | 952119..952544 | + | 426 | WP_000693855.1 | Rha family transcriptional regulator | - |
E3149_RS04500 | 952751..953206 | - | 456 | WP_000273724.1 | hypothetical protein | - |
E3149_RS04505 | 953285..954376 | + | 1092 | WP_001205823.1 | hypothetical protein | - |
E3149_RS04510 | 954383..955129 | + | 747 | WP_000788751.1 | ATP-binding protein | - |
E3149_RS04515 | 955151..955921 | + | 771 | WP_000450992.1 | DUF1627 domain-containing protein | - |
Associated MGEs
MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
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Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 96 a.a. Molecular weight: 10978.84 Da Isoelectric Point: 10.1360
>T122755 WP_001303876.1 NZ_CP038428:c951134-950847 [Escherichia coli O157:H7]
MLPILWLPSARDDLRQIITYIAKENPPAARRLKIRIETSVLPLSEHPYLYPPSERVSGLREIVTHPNYIILYRVAASSIE
IVSVTHSRRQFPFSI
MLPILWLPSARDDLRQIITYIAKENPPAARRLKIRIETSVLPLSEHPYLYPPSERVSGLREIVTHPNYIILYRVAASSIE
IVSVTHSRRQFPFSI
Download Length: 288 bp
>T122755 NZ_CP038428:c951134-950847 [Escherichia coli O157:H7]
ATGTTACCCATTTTATGGCTACCGTCTGCTCGCGATGATTTGCGCCAGATCATAACTTACATCGCCAAGGAGAACCCACC
GGCAGCACGTAGACTAAAAATACGCATTGAAACATCGGTATTACCTCTATCTGAGCATCCGTACTTATATCCACCAAGCG
AACGGGTTTCTGGATTGAGAGAGATCGTGACCCACCCTAACTACATAATCCTGTACAGAGTAGCTGCTTCAAGCATTGAG
ATTGTAAGCGTGACACATTCTCGGCGACAATTTCCCTTCTCTATCTGA
ATGTTACCCATTTTATGGCTACCGTCTGCTCGCGATGATTTGCGCCAGATCATAACTTACATCGCCAAGGAGAACCCACC
GGCAGCACGTAGACTAAAAATACGCATTGAAACATCGGTATTACCTCTATCTGAGCATCCGTACTTATATCCACCAAGCG
AACGGGTTTCTGGATTGAGAGAGATCGTGACCCACCCTAACTACATAATCCTGTACAGAGTAGCTGCTTCAAGCATTGAG
ATTGTAAGCGTGACACATTCTCGGCGACAATTTCCCTTCTCTATCTGA
Antitoxin
Download Length: 64 a.a. Molecular weight: 7025.80 Da Isoelectric Point: 4.0270
>AT122755 WP_000536233.1 NZ_CP038428:c951325-951134 [Escherichia coli O157:H7]
MGTALSPIVSEFETTEQENSYNEWLRTKVTSSLADTRPAIPHDEVMAEMENLIAQIAVTNKSE
MGTALSPIVSEFETTEQENSYNEWLRTKVTSSLADTRPAIPHDEVMAEMENLIAQIAVTNKSE
Download Length: 192 bp
>AT122755 NZ_CP038428:c951325-951134 [Escherichia coli O157:H7]
ATGGGTACAGCCCTTTCTCCGATAGTTTCAGAATTCGAAACTACCGAACAAGAAAACAGTTACAACGAATGGTTGCGCAC
TAAAGTAACGTCAAGCCTTGCAGACACTCGCCCCGCAATTCCACATGACGAGGTAATGGCTGAAATGGAAAATCTTATTG
CTCAAATTGCTGTAACTAACAAGAGCGAGTAA
ATGGGTACAGCCCTTTCTCCGATAGTTTCAGAATTCGAAACTACCGAACAAGAAAACAGTTACAACGAATGGTTGCGCAC
TAAAGTAACGTCAAGCCTTGCAGACACTCGCCCCGCAATTCCACATGACGAGGTAATGGCTGAAATGGAAAATCTTATTG
CTCAAATTGCTGTAACTAACAAGAGCGAGTAA
Similar Proteins
Only experimentally validated proteins are listed.
Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
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Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
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Structures
Toxin
Source | ID | Structure |
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Antitoxin
Source | ID | Structure |
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