Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2334936..2335207 | Replicon | chromosome |
| Accession | NZ_CP038425 | ||
| Organism | Escherichia coli O157:H7 strain 2571 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2335066..2335169 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2334936..2335207 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| E3150_RS11805 | 2331491..2332153 | - | 663 | WP_000944243.1 | exodeoxyribonuclease X | - |
| E3150_RS11810 | 2332177..2332833 | - | 657 | WP_000011656.1 | carbon-nitrogen hydrolase family protein | - |
| E3150_RS11815 | 2332935..2333165 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| E3150_RS11820 | 2333304..2333678 | + | 375 | WP_000168751.1 | CopC domain-containing protein YobA | - |
| E3150_RS11825 | 2333682..2334554 | + | 873 | WP_000879314.1 | copper homeostasis membrane protein CopD | - |
| E3150_RS11830 | 2334567..2334908 | + | 342 | WP_000976483.1 | YebY family protein | - |
| - | 2334936..2335207 | - | 272 | - | - | Antitoxin |
| - | 2335066..2335169 | + | 104 | - | - | Toxin |
| E3150_RS11835 | 2335304..2335960 | + | 657 | WP_000812736.1 | protein-serine/threonine phosphatase | - |
| E3150_RS11840 | 2335961..2336152 | - | 192 | WP_001296140.1 | YebW family protein | - |
| E3150_RS11845 | 2336257..2336493 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
| E3150_RS11850 | 2336611..2338050 | - | 1440 | WP_001302304.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T122729 NZ_CP038425:2335066-2335169 [Escherichia coli O157:H7]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT122729 NZ_CP038425:c2335207-2334936 [Escherichia coli O157:H7]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
