Detailed information of TA system TA122676

Bioinformatically predicted

Overview

TA module

• Type: II
• Classification (family/domain): ccdAB/CcdA(antitoxin)
• Location: 4652427..4652977
• Replicon: chromosome
• Accession: NZ_CP038421
• Organism: Escherichia coli O157:H7 strain 7636

Toxin (Protein)

• Gene name: ccdB
• Uniprot ID: D3H432
• Locus tag: E3152_RS23160
• Protein ID: WP_001160975.1
• Coordinates: 4652427..4652741 (-)
• Length: 105 a.a.

Antitoxin (Protein)

• Gene name: ccdA
• Uniprot ID: V0VEX8
• Locus tag: E3152_RS23165
• Protein ID: WP_000125566.1
• Coordinates: 4652744..4652977 (-)
• Length: 78 a.a.

Genomic Context

Locus tag	Coordinates	Strand	Size (bp)	Protein ID	Product	Description
E3152_RS23135	4648102..4649388	+	1287	WP_000800457.1	peptidylprolyl isomerase SurA	-
E3152_RS23140	4649388..4650377	+	990	WP_000241259.1	4-hydroxythreonine-4-phosphate dehydrogenase PdxA	-
E3152_RS23145	4650374..4651195	+	822	WP_001065380.1	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA	-
E3152_RS23150	4651198..4651575	+	378	WP_000610901.1	Co2+/Mg2+ efflux protein ApaG	-
E3152_RS23155	4651582..4652430	+	849	WP_000257187.1	bis(5'-nucleosyl)-tetraphosphatase (symmetrical) ApaH	-
E3152_RS23160	4652427..4652741	-	315	WP_001160975.1	CcdB family protein	Toxin
E3152_RS23165	4652744..4652977	-	234	WP_000125566.1	type II toxin-antitoxin system CcdA family antitoxin	Antitoxin
E3152_RS23170	4653063..4653542	-	480	WP_000624372.1	type 3 dihydrofolate reductase	-
E3152_RS23175	4653734..4655596	-	1863	WP_000377184.1	glutathione-regulated potassium-efflux system protein KefC	-
E3152_RS23180	4655589..4656119	-	531	WP_000600700.1	glutathione-regulated potassium-efflux system oxidoreductase KefF	-
E3152_RS23185	4656227..4657558	-	1332	WP_001183177.1	MFS transporter	-
E3152_RS23190	4657616..4657903	-	288	WP_000203741.1	ferredoxin-like protein FixX	-

Associated MGEs

MGE detail	Similar MGEs	Relative position	MGE Type	Cargo ARG	Virulence gene	Coordinates	Length (bp)

Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.

Domains

Predicted by InterproScan

Toxin

• Toxin CcdB (2-103)

Antitoxin

• Post-segregation antitoxin CcdA (8-77)

Sequences

Toxin

Protein

• Length: 105 a.a.
• Molecular weight: 11711.76 Da
• Isoelectric Point: 9.8517

>T122676 WP_001160975.1 NZ_CP038421:c4652741-4652427 [Escherichia coli O157:H7]
MQFTVYRSRSRNAAFPFVIDVTSDIIGVINRRIVIPLTPIERFSRIRPPERLNPILLLVDGKEYVLMTHETATVPVNALG
TKFCDASAHRTLIKGALDFMLDGI

Nucleotide

• Length: 315 bp

>T122676 NZ_CP038421:c4652741-4652427 [Escherichia coli O157:H7]
ATGCAATTTACGGTATACCGCAGTCGCAGCAGGAACGCCGCGTTTCCCTTTGTTATCGATGTTACCAGCGACATTATTGG
TGTGATTAATCGCCGTATTGTTATTCCATTAACACCTATTGAACGATTTAGCCGTATTCGCCCACCAGAACGGCTTAACC
CAATCCTTTTACTGGTAGACGGCAAAGAATATGTGCTCATGACGCATGAGACTGCAACTGTTCCAGTTAACGCGCTGGGA
ACGAAATTTTGCGATGCCAGCGCGCACCGAACGTTGATTAAAGGAGCATTAGATTTTATGCTCGACGGGATTTAA

Antitoxin

Protein

• Length: 78 a.a.
• Molecular weight: 8530.53 Da
• Isoelectric Point: 5.8062

>AT122676 WP_000125566.1 NZ_CP038421:c4652977-4652744 [Escherichia coli O157:H7]
MTAKRTTQSVTVTVDRELVNRARDAGLNMSATLTVALNAELKKHAATRWREENAEAIAALNQLADETGCFSDEYRSF

Nucleotide

• Length: 234 bp

>AT122676 NZ_CP038421:c4652977-4652744 [Escherichia coli O157:H7]
ATGACTGCAAAACGTACCACACAAAGTGTGACCGTCACCGTCGACCGTGAGTTAGTCAATCGCGCTCGTGATGCAGGCTT
AAATATGAGCGCCACCCTTACGGTTGCGCTCAATGCTGAACTTAAAAAACATGCAGCAACACGTTGGCGTGAAGAGAACG
CTGAAGCTATCGCTGCGTTAAATCAATTGGCTGATGAAACCGGATGTTTCTCTGATGAGTACCGGAGCTTCTAG

Structures

Antitoxin

• AlphaFold DB: A0A7U9LTM9