Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2285886..2286157 | Replicon | chromosome |
| Accession | NZ_CP038421 | ||
| Organism | Escherichia coli O157:H7 strain 7636 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2286016..2286119 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2285886..2286157 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| E3152_RS11430 | 2282441..2283103 | - | 663 | WP_000944243.1 | exodeoxyribonuclease X | - |
| E3152_RS11435 | 2283127..2283783 | - | 657 | WP_000011656.1 | carbon-nitrogen hydrolase family protein | - |
| E3152_RS11440 | 2283885..2284115 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| E3152_RS11445 | 2284254..2284628 | + | 375 | WP_000168751.1 | CopC domain-containing protein YobA | - |
| E3152_RS11450 | 2284632..2285504 | + | 873 | WP_000879314.1 | copper homeostasis membrane protein CopD | - |
| E3152_RS11455 | 2285517..2285858 | + | 342 | WP_000976483.1 | YebY family protein | - |
| - | 2285886..2286157 | - | 272 | - | - | Antitoxin |
| - | 2286016..2286119 | + | 104 | - | - | Toxin |
| E3152_RS11460 | 2286254..2286910 | + | 657 | WP_000812736.1 | protein-serine/threonine phosphatase | - |
| E3152_RS11465 | 2286911..2287102 | - | 192 | WP_001296140.1 | YebW family protein | - |
| E3152_RS11470 | 2287207..2287443 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
| E3152_RS11475 | 2287561..2289000 | - | 1440 | WP_001302304.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T122655 NZ_CP038421:2286016-2286119 [Escherichia coli O157:H7]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT122655 NZ_CP038421:c2286157-2285886 [Escherichia coli O157:H7]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
