Detailed information of TA system TA122626

Bioinformatically predicted

Overview

TA module

• Type: II
• Classification (family/domain): paaR-paaA-parE/-
• Location: 2574403..2574874
• Replicon: chromosome
• Accession: NZ_CP038419
• Organism: Escherichia coli O157:H7 strain 2-6-2

Toxin (Protein)

• Gene name: parE_1
• Uniprot ID: A0A0D7C2L1
• Locus tag: E4U89_RS12935
• Protein ID: WP_001303511.1
• Coordinates: 2574403..2574681 (-)
• Length: 93 a.a.

Antitoxin (Protein)

• Gene name: paaA
• Uniprot ID: Q8XAD5
• Locus tag: E4U89_RS12940
• Protein ID: WP_001302048.1
• Coordinates: 2574683..2574874 (-)
• Length: 64 a.a.

Genomic Context

Locus tag	Coordinates	Strand	Size (bp)	Protein ID	Product	Description
E4U89_RS12895	2569409..2569593	-	185	Protein_2523	DUF3596 domain-containing protein	-
E4U89_RS12900	2569628..2569879	-	252	WP_000005552.1	excisionase family protein	-
E4U89_RS12905	2569952..2572423	-	2472	WP_000048458.1	exonuclease	-
E4U89_RS12910	2572516..2572707	-	192	WP_001090200.1	DUF1482 family protein	-
E4U89_RS12915	2572704..2572892	-	189	WP_000449192.1	cell division inhibition protein DicB	-
E4U89_RS12920	2573293..2573457	+	165	WP_001331716.1	hypothetical protein	-
E4U89_RS12925	2573461..2573679	-	219	WP_001171930.1	hypothetical protein	-
E4U89_RS12930	2573751..2574050	-	300	WP_001240334.1	hypothetical protein	-
E4U89_RS12935	2574403..2574681	-	279	WP_001303511.1	type II toxin-antitoxin system RelE/ParE family toxin	Toxin
E4U89_RS12940	2574683..2574874	-	192	WP_001302048.1	hypothetical protein	Antitoxin
E4U89_RS12945	2574895..2575266	-	372	WP_001169686.1	hypothetical protein	-
E4U89_RS12950	2575364..2575666	+	303	WP_000172738.1	transcriptional regulator	-
E4U89_RS12955	2575663..2576088	+	426	WP_000693943.1	Rha family transcriptional regulator	-
E4U89_RS12960	2576111..2577073	+	963	WP_000095670.1	helix-turn-helix domain-containing protein	-
E4U89_RS12965	2577080..2577820	+	741	WP_000788936.1	ATP-binding protein	-
E4U89_RS12970	2577846..2578615	+	770	Protein_2538	DUF1627 domain-containing protein	-
E4U89_RS12975	2578631..2579026	+	396	WP_001118159.1	DUF977 family protein	-
E4U89_RS12980	2579083..2579667	+	585	WP_000206793.1	DUF551 domain-containing protein	-

Associated MGEs

MGE detail	Similar MGEs	Relative position	MGE Type	Cargo ARG	Virulence gene	Coordinates	Length (bp)
	-	inside	Prophage	-	nleA/espI	2559523..2619199	59676

Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.

Domains

Predicted by InterproScan

Toxin

• Toxin-antitoxin system, RelE/ParE toxin family (4-91)

Antitoxin

No domain identified.

Sequences

Toxin

Protein

• Length: 93 a.a.
• Molecular weight: 10661.25 Da
• Isoelectric Point: 5.5647

>T122626 WP_001303511.1 NZ_CP038419:c2574681-2574403 [Escherichia coli O157:H7]
MLPVLWLESADTDLDDITSYIARFDIDAAERLWQRLRGCVLPLSEHPYLYPPSDRVPGLREIVAHPNYIILYRVTTSSVE
VVNVIHARRQFP

Nucleotide

• Length: 279 bp

>T122626 NZ_CP038419:c2574681-2574403 [Escherichia coli O157:H7]
ATGTTACCCGTGTTATGGCTTGAAAGCGCAGATACCGACCTAGATGATATAACTAGTTATATTGCTCGTTTCGACATAGA
TGCGGCTGAACGCTTATGGCAGCGATTAAGGGGTTGTGTGCTGCCGTTATCCGAACATCCGTATTTATACCCACCAAGCG
ACAGAGTACCTGGCTTGCGTGAGATTGTAGCCCACCCTAACTATATAATTCTATACCGCGTAACAACATCAAGCGTTGAA
GTAGTAAACGTGATCCACGCAAGACGCCAGTTTCCCTAA

Antitoxin

Protein

• Length: 64 a.a.
• Molecular weight: 7463.47 Da
• Isoelectric Point: 8.6828

>AT122626 WP_001302048.1 NZ_CP038419:c2574874-2574683 [Escherichia coli O157:H7]
MNRALSPMVSEFETIEQENSYNEWLRAKVATSLADPRPAIPHDEVERRMAERFAKMRKERSKQ

Nucleotide

• Length: 192 bp

>AT122626 NZ_CP038419:c2574874-2574683 [Escherichia coli O157:H7]
ATGAATAGAGCCCTTTCACCAATGGTTTCTGAATTTGAAACCATTGAACAAGAAAACAGTTACAACGAATGGCTGCGTGC
GAAAGTAGCAACGAGCCTTGCAGATCCGCGCCCAGCAATTCCCCATGACGAAGTTGAGCGCAGAATGGCAGAACGCTTTG
CTAAGATGCGCAAGGAACGGAGCAAGCAGTAA

Structures

Toxin

• PDB: 5CZF
• PDB: 5CW7
• PDB: 5CZE

Antitoxin

• PDB: 5CZF
• PDB: 3ZBE
• PDB: 5CW7
• AlphaFold DB: A0A829CTP0