Detailed information of TA system    

insolicoBioinformatically predicted

Overview


TA module


Type II Classification (family/domain) relBE/RHH(antitoxin)
Location 73338..73897 Replicon plasmid pGM351-1
Accession NZ_CP038418
Organism Escherichia coli O157:H7 strain 3-5-1

Toxin (Protein)


Gene name relE Uniprot ID O82928
Locus tag E4U90_RS27950 Protein ID WP_000421248.1
Coordinates 73622..73897 (+) Length 92 a.a.

Antitoxin (Protein)


Gene name relB Uniprot ID C1J8K5
Locus tag E4U90_RS27945 Protein ID WP_001178089.1
Coordinates 73338..73622 (+) Length 95 a.a.

Genomic Context


Locus tag Coordinates Strand Size (bp) Protein ID Product Description
E4U90_RS27905 68531..69091 + 561 WP_000840472.1 fertility inhibition protein FinO -
E4U90_RS27910 69224..69436 + 213 WP_001302189.1 ANR family transcriptional regulator -
E4U90_RS27915 69681..70142 + 462 WP_001233856.1 thermonuclease family protein -
E4U90_RS27920 70188..70397 + 210 WP_001302200.1 hemolysin expression modulator Hha -
E4U90_RS27925 70435..70773 + 339 WP_000766796.1 hypothetical protein -
E4U90_RS27930 71013..71267 + 255 WP_000083831.1 replication regulatory protein RepA -
E4U90_RS27935 71503..71577 + 75 WP_001370046.1 RepA leader peptide Tap -
E4U90_RS27940 71570..72427 + 858 WP_000130945.1 incFII family plasmid replication initiator RepA -
E4U90_RS27945 73338..73622 + 285 WP_001178089.1 ribbon-helix-helix domain-containing protein Antitoxin
E4U90_RS27950 73622..73897 + 276 WP_000421248.1 type II toxin-antitoxin system RelE/ParE family toxin Toxin
E4U90_RS27955 73992..74198 + 207 WP_001105064.1 hypothetical protein -
E4U90_RS27960 74298..74513 - 216 Protein_80 transposase -
E4U90_RS27965 74557..75123 - 567 Protein_81 IS3-like element IS600 family transposase -
E4U90_RS27970 75123..75539 - 417 Protein_82 transposase zinc-binding domain-containing protein -
E4U90_RS27975 75539..75724 - 186 WP_001302179.1 hypothetical protein -
E4U90_RS27980 75901..78111 + 2211 WP_000592771.1 catalase/peroxidase KatP -
E4U90_RS27985 78155..78544 + 390 WP_001172748.1 cytochrome b562 family protein -

Associated MGEs


MGE
detail
Similar
MGEs
Relative
position
MGE Type Cargo ARG Virulence gene Coordinates Length (bp)
- inside Non-Mobilizable plasmid - stcE / exeE / exeG / hlyC / hlyA / hlyB / hlyD / toxB / espP 1..94184 94184


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.



Sequences


Toxin        


Download         Length: 92 a.a.        Molecular weight: 10735.42 Da        Isoelectric Point: 9.9324

>T122608 WP_000421248.1 NZ_CP038418:73622-73897 [Escherichia coli O157:H7]
MELKWSSKALSDLARLYDFLVLASKPAAARTVQSLTQAPVILLTHPRMGEQLFQFEPREVRRIFAGEYEIRYELNGQTIY
VLRLWHTRENR

Download         Length: 276 bp

>T122608 NZ_CP038418:73622-73897 [Escherichia coli O157:H7]
ATGGAACTGAAGTGGAGCAGTAAAGCGCTTTCTGATTTGGCGCGGTTATATGATTTTCTGGTGCTAGCCAGTAAACCTGC
TGCCGCCAGAACGGTACAGTCCCTGACACAGGCACCGGTCATTCTGTTAACTCATCCACGTATGGGGGAACAGTTATTTC
AGTTTGAACCCAGGGAGGTCAGACGGATTTTTGCTGGCGAGTACGAAATCCGTTACGAACTTAATGGCCAGACTATTTAT
GTATTGCGCCTGTGGCACACACGAGAAAACAGGTAG

Antitoxin


Download         Length: 95 a.a.        Molecular weight: 10474.89 Da        Isoelectric Point: 5.6558

>AT122608 WP_001178089.1 NZ_CP038418:73338-73622 [Escherichia coli O157:H7]
MQMKNNTAQATKVITAHVPLPMADKVDQMAARLERSRGWVIKQALSAWLAQEEERNRLTLEALDDVTSGQVIDHQAVQAW
ADSLSTDNPLPVPR

Download         Length: 285 bp

>AT122608 NZ_CP038418:73338-73622 [Escherichia coli O157:H7]
ATGCAAATGAAAAACAATACCGCACAAGCAACAAAAGTCATTACCGCGCATGTGCCATTACCTATGGCTGATAAAGTCGA
CCAGATGGCCGCCAGACTGGAACGCTCCCGGGGTTGGGTTATCAAACAGGCGCTTTCTGCATGGCTTGCCCAGGAGGAGG
AGCGTAATCGCCTGACGCTGGAAGCCCTGGACGATGTGACATCCGGACAGGTTATTGACCATCAGGCTGTACAGGCCTGG
GCGGACAGCCTCAGTACTGACAATCCGTTACCGGTGCCACGCTGA

Similar Proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures


Toxin

Source ID Structure
AlphaFold DB A0A2Z6FAZ0


Antitoxin

Source ID Structure
AlphaFold DB A0A731IHA8

References