Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type V Classification (family/domain) ghoTS/ghoT-GhoS
Location 4986867..4987364 Replicon chromosome
Accession NZ_CP038412
Organism Escherichia coli O157:H7 strain 493/89

Toxin (Protein)


Gene name ghoT Uniprot ID L4JJG6
Locus tag E3172_RS24660 Protein ID WP_001173343.1
Coordinates 4986867..4987040 (-) Length 58 a.a.

Antitoxin (Protein)


Gene name ghoS Uniprot ID L4JK92
Locus tag E3172_RS24665 Protein ID WP_000398619.1
Coordinates 4987068..4987364 (-) Length 99 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
E3172_RS24650 4983537..4984994 + 1458 WP_000856824.1 dipeptide/tripeptide permease DtpC -
E3172_RS24655 4985231..4986748 + 1518 WP_001295074.1 lysine--tRNA ligase -
E3172_RS24660 4986867..4987040 - 174 WP_001173343.1 type V toxin-antitoxin system toxin GhoT Toxin
E3172_RS24665 4987068..4987364 - 297 WP_000398619.1 type V toxin-antitoxin system endoribonuclease antitoxin GhoS Antitoxin
E3172_RS24670 4987591..4987863 - 273 WP_000405647.1 N-acetyltransferase -
E3172_RS24675 4987875..4988105 - 231 WP_000371704.1 (4Fe-4S)-binding protein -
E3172_RS24680 4988286..4989917 + 1632 WP_001216477.1 sensor histidine kinase -
E3172_RS24685 4989914..4990633 + 720 WP_000611288.1 two-component system response regulator DcuR -
E3172_RS24690 4991104..4992255 - 1152 WP_001254932.1 IS30-like element IS30 family transposase -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)
- flank IS/Tn - - 4991104..4992255 1151


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin GhoT/OrtT

(4-57)

Antitoxin

Endoribonuclease antitoxin GhoS

(5-94)


Sequences

Toxin        


Download         Length: 58 a.a.        Molecular weight: 6555.06 Da        Isoelectric Point: 10.2288

>T122522 WP_001173343.1 NZ_CP038412:c4987040-4986867 [Escherichia coli O157:H7]
MALFSKILIFYVIGVNISFVIIWFISHEKTHIRLLSAFLVGITWPMSLPVALLFSLF

Download         Length: 174 bp

>T122522 NZ_CP038412:c4987040-4986867 [Escherichia coli O157:H7]
ATGGCACTATTCTCTAAAATATTAATTTTTTATGTGATTGGTGTGAACATATCCTTTGTCATTATCTGGTTTATCTCACA
TGAGAAAACACATATTCGTTTACTTAGTGCATTCCTGGTCGGAATAACCTGGCCAATGAGTCTGCCTGTGGCATTACTTT
TTTCTCTCTTTTAG

Antitoxin


Download         Length: 99 a.a.        Molecular weight: 11467.97 Da        Isoelectric Point: 4.1705

>AT122522 WP_000398619.1 NZ_CP038412:c4987364-4987068 [Escherichia coli O157:H7]
MEGKNKFNTYVVSFDYPSSYSSVFLRLRSLMYDMNFSSIVADEYGIPRQLNENSFAITTSLAASEIEDLIRLKCLDLPDI
DFDLNIMTVDDYFRQFYK

Download         Length: 297 bp

>AT122522 NZ_CP038412:c4987364-4987068 [Escherichia coli O157:H7]
ATGGAAGGTAAAAACAAGTTCAATACTTATGTTGTTTCTTTTGATTATCCATCATCTTATTCCTCAGTGTTCTTAAGGTT
AAGATCATTGATGTATGATATGAATTTCTCTTCTATCGTGGCTGATGAATATGGGATACCACGACAATTGAATGAAAATT
CCTTCGCAATAACGACATCGTTAGCCGCAAGTGAAATCGAAGATTTAATCAGGCTTAAATGCTTAGACTTACCGGATATT
GACTTTGACCTCAACATTATGACAGTTGATGACTATTTCCGTCAGTTTTACAAGTAG

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
AlphaFold DB A0A7U9QI41

Antitoxin

Source ID Structure
PDB 2LLZ
AlphaFold DB A0A7U9QBH6

References