Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 3259696..3259967 | Replicon | chromosome |
| Accession | NZ_CP038412 | ||
| Organism | Escherichia coli O157:H7 strain 493/89 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 3259734..3259837 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 3259696..3259967 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| E3172_RS16305 | 3256853..3258292 | + | 1440 | WP_001302304.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| E3172_RS16310 | 3258410..3258646 | + | 237 | WP_001295499.1 | DUF1480 family protein | - |
| E3172_RS16315 | 3258751..3258942 | + | 192 | WP_001296140.1 | YebW family protein | - |
| E3172_RS16320 | 3258943..3259599 | - | 657 | WP_000812736.1 | protein-serine/threonine phosphatase | - |
| - | 3259696..3259967 | + | 272 | - | - | Antitoxin |
| - | 3259734..3259837 | - | 104 | - | - | Toxin |
| E3172_RS16325 | 3259995..3260336 | - | 342 | WP_000976483.1 | YebY family protein | - |
| E3172_RS16330 | 3260349..3261221 | - | 873 | WP_000879314.1 | copper homeostasis membrane protein CopD | - |
| E3172_RS16335 | 3261225..3261599 | - | 375 | WP_000168751.1 | CopC domain-containing protein YobA | - |
| E3172_RS16340 | 3261738..3261968 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| E3172_RS16345 | 3262070..3262726 | + | 657 | WP_000011656.1 | carbon-nitrogen hydrolase family protein | - |
| E3172_RS16350 | 3262750..3263412 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T122505 NZ_CP038412:c3259837-3259734 [Escherichia coli O157:H7]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT122505 NZ_CP038412:3259696-3259967 [Escherichia coli O157:H7]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
