Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2194170..2194441 | Replicon | chromosome |
| Accession | NZ_CP038405 | ||
| Organism | Escherichia coli O157:H7 strain ATCC 35150 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2194300..2194403 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2194170..2194441 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| E3153_RS10835 | 2190725..2191387 | - | 663 | WP_000944243.1 | exodeoxyribonuclease X | - |
| E3153_RS10840 | 2191411..2192067 | - | 657 | WP_000011656.1 | carbon-nitrogen hydrolase family protein | - |
| E3153_RS10845 | 2192169..2192399 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| E3153_RS10850 | 2192538..2192912 | + | 375 | WP_000168751.1 | CopC domain-containing protein YobA | - |
| E3153_RS10855 | 2192916..2193788 | + | 873 | WP_000879314.1 | copper homeostasis membrane protein CopD | - |
| E3153_RS10860 | 2193801..2194142 | + | 342 | WP_000976483.1 | YebY family protein | - |
| - | 2194170..2194441 | - | 272 | - | - | Antitoxin |
| - | 2194300..2194403 | + | 104 | - | - | Toxin |
| E3153_RS10865 | 2194538..2195194 | + | 657 | WP_000812736.1 | protein-serine/threonine phosphatase | - |
| E3153_RS10870 | 2195195..2195386 | - | 192 | WP_001296140.1 | YebW family protein | - |
| E3153_RS10875 | 2195491..2195727 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
| E3153_RS10880 | 2195845..2197284 | - | 1440 | WP_001302304.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T122435 NZ_CP038405:2194300-2194403 [Escherichia coli O157:H7]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT122435 NZ_CP038405:c2194441-2194170 [Escherichia coli O157:H7]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
