Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type VIII Classification (family/domain) SdsR-RyeA/-
Location 2307648..2307919 Replicon chromosome
Accession NZ_CP038402
Organism Escherichia coli O157:H7 strain BB24-1

Toxin (RNA)


Gene name SdsR
Locus tag -
Coordinates 2307778..2307881 (+)

Antitoxin (RNA)


Gene name RyeA
Locus tag -
Coordinates 2307648..2307919 (-)

Genomic Context

E4U87_RS11625E4U87_RS11630E4U87_RS11635--E4U87_RS11640E4U87_RS11610E4U87_RS11615E4U87_RS11620--E4U87_RS11645E4U87_RS11650E4U87_RS11655
Location: 2306016..2306390 (375 bp)
Type: Others
Protein ID: WP_000168751.1
Location: 2306394..2307266 (873 bp)
Type: Others
Protein ID: WP_000879314.1
Location: 2307279..2307620 (342 bp)
Type: Others
Protein ID: WP_000976483.1
Location: 2307778..2307881 (104 bp)
Type: Toxin
Protein ID: -
Location: 2308016..2308672 (657 bp)
Type: Others
Protein ID: WP_000812736.1
Location: 2304203..2304865 (663 bp)
Type: Others
Protein ID: WP_000944243.1
Location: 2304889..2305545 (657 bp)
Type: Others
Protein ID: WP_000011656.1
Location: 2305647..2305877 (231 bp)
Type: Others
Protein ID: WP_000916763.1
Location: 2307648..2307919 (272 bp)
Type: Antitoxin
Protein ID: -
Location: 2308673..2308864 (192 bp)
Type: Others
Protein ID: WP_001296140.1
Location: 2308969..2309205 (237 bp)
Type: Others
Protein ID: WP_001295499.1
Location: 2309323..2310762 (1440 bp)
Type: Others
Protein ID: WP_001302304.1
ToxinAntitoxinOther genes
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Locus tag
Coordinates
Strand
Size (bp)
Protein ID
Product
Description
E4U87_RS116102304203..2304865-663WP_000944243.1exodeoxyribonuclease X-
E4U87_RS116152304889..2305545-657WP_000011656.1carbon-nitrogen hydrolase family protein-
E4U87_RS116202305647..2305877-231WP_000916763.1DNA polymerase III subunit theta-
E4U87_RS116252306016..2306390+375WP_000168751.1CopC domain-containing protein YobA-
E4U87_RS116302306394..2307266+873WP_000879314.1copper homeostasis membrane protein CopD-
E4U87_RS116352307279..2307620+342WP_000976483.1YebY family protein-
-2307648..2307919-272--Antitoxin
-2307778..2307881+104--Toxin
E4U87_RS116402308016..2308672+657WP_000812736.1protein-serine/threonine phosphatase-
E4U87_RS116452308673..2308864-192WP_001296140.1YebW family protein-
E4U87_RS116502308969..2309205-237WP_001295499.1DUF1480 family protein-
E4U87_RS116552309323..2310762-1440WP_001302304.116S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF-

Associated MGEs

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MGE
detail
Similar
MGEs
Relative
position
MGE Type
Cargo ARG
Virulence gene
Coordinates
Length (bp)
No matching records found


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Sequences

Toxin        


Download         Length: 104 bp

>T122397 NZ_CP038402:2307778-2307881 [Escherichia coli O157:H7]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT

Antitoxin


Download         Length: 272 bp

>AT122397 NZ_CP038402:c2307919-2307648 [Escherichia coli O157:H7]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT

Structures

Antitoxin

Download structure file

Antitoxin

Download structure file

References