Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2196675..2196946 | Replicon | chromosome |
| Accession | NZ_CP038386 | ||
| Organism | Escherichia coli O157:H7 strain DEC5D | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2196805..2196908 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2196675..2196946 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| E3157_RS10510 | 2193230..2193892 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| E3157_RS10515 | 2193916..2194572 | - | 657 | WP_000011661.1 | carbon-nitrogen hydrolase family protein | - |
| E3157_RS10520 | 2194674..2194904 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| E3157_RS10525 | 2195043..2195417 | + | 375 | WP_000168751.1 | CopC domain-containing protein YobA | - |
| E3157_RS10530 | 2195421..2196293 | + | 873 | WP_000879314.1 | copper homeostasis membrane protein CopD | - |
| E3157_RS10535 | 2196306..2196647 | + | 342 | WP_000976483.1 | YebY family protein | - |
| - | 2196675..2196946 | - | 272 | - | - | Antitoxin |
| - | 2196805..2196908 | + | 104 | - | - | Toxin |
| E3157_RS10540 | 2197043..2197699 | + | 657 | WP_000812736.1 | protein-serine/threonine phosphatase | - |
| E3157_RS10545 | 2197700..2197891 | - | 192 | WP_001296140.1 | YebW family protein | - |
| E3157_RS10550 | 2197996..2198232 | - | 237 | WP_001359800.1 | DUF1480 family protein | - |
| E3157_RS10555 | 2198350..2199789 | - | 1440 | WP_001419087.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T122266 NZ_CP038386:2196805-2196908 [Escherichia coli O157:H7]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT122266 NZ_CP038386:c2196946-2196675 [Escherichia coli O157:H7]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
