Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 3238415..3238686 | Replicon | chromosome |
| Accession | NZ_CP038376 | ||
| Organism | Escherichia coli O157:H7 strain F1273 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 3238453..3238556 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 3238415..3238686 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| E3159_RS15995 | 3235572..3237011 | + | 1440 | WP_001302304.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| E3159_RS16000 | 3237129..3237365 | + | 237 | WP_001295499.1 | DUF1480 family protein | - |
| E3159_RS16005 | 3237470..3237661 | + | 192 | WP_001296140.1 | YebW family protein | - |
| E3159_RS16010 | 3237662..3238318 | - | 657 | WP_000812736.1 | protein-serine/threonine phosphatase | - |
| - | 3238415..3238686 | + | 272 | - | - | Antitoxin |
| - | 3238453..3238556 | - | 104 | - | - | Toxin |
| E3159_RS16015 | 3238714..3239055 | - | 342 | WP_000976483.1 | YebY family protein | - |
| E3159_RS16020 | 3239068..3239940 | - | 873 | WP_000879314.1 | copper homeostasis membrane protein CopD | - |
| E3159_RS16025 | 3239944..3240318 | - | 375 | WP_000168751.1 | CopC domain-containing protein YobA | - |
| E3159_RS16030 | 3240457..3240687 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| E3159_RS16035 | 3240789..3241445 | + | 657 | WP_000011656.1 | carbon-nitrogen hydrolase family protein | - |
| E3159_RS16040 | 3241469..3242131 | + | 663 | WP_000944243.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T122169 NZ_CP038376:c3238556-3238453 [Escherichia coli O157:H7]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT122169 NZ_CP038376:3238415-3238686 [Escherichia coli O157:H7]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
