Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) hicAB/UPF0150(antitoxin)
Location 2761485..2762123 Replicon chromosome
Accession NZ_CP038376
Organism Escherichia coli O157:H7 strain F1273

Toxin (Protein)


Gene name hicA Uniprot ID S1F9G9
Locus tag E3159_RS13645 Protein ID WP_000813794.1
Coordinates 2761947..2762123 (-) Length 59 a.a.

Antitoxin (Protein)


Gene name hicB Uniprot ID -
Locus tag E3159_RS13640 Protein ID WP_001270286.1
Coordinates 2761485..2761901 (-) Length 139 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
E3159_RS13620 2756637..2757578 - 942 WP_001251315.1 ABC transporter permease -
E3159_RS13625 2757579..2758592 - 1014 WP_000220402.1 ABC transporter ATP-binding protein -
E3159_RS13630 2758610..2759755 - 1146 WP_000047432.1 ABC transporter substrate-binding protein -
E3159_RS13635 2760000..2761406 - 1407 WP_000760654.1 PLP-dependent aminotransferase family protein -
E3159_RS13640 2761485..2761901 - 417 WP_001270286.1 type II toxin-antitoxin system antitoxin HicB Antitoxin
E3159_RS13645 2761947..2762123 - 177 WP_000813794.1 type II toxin-antitoxin system mRNA interferase toxin HicA Toxin
E3159_RS13650 2762345..2762575 + 231 WP_000494244.1 YncJ family protein -
E3159_RS13655 2762667..2764628 - 1962 WP_001303492.1 23S rRNA 5-hydroxycytidine C2501 synthase -
E3159_RS13660 2764701..2765237 - 537 WP_000429145.1 DNA-binding transcriptional regulator SutR -
E3159_RS13665 2765290..2766501 + 1212 WP_071525382.1 BenE family transporter YdcO -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

HicA mRNA interferase family

(5-57)

Antitoxin

Cro/C1-type helix-turn-helix domain

(91-134)


Sequences

Toxin        


Download         Length: 59 a.a.        Molecular weight: 6749.83 Da        Isoelectric Point: 11.2298

>T122167 WP_000813794.1 NZ_CP038376:c2762123-2761947 [Escherichia coli O157:H7]
VKQSEFRRWLESQGVDVANGSNHLKLRFHGRRSVMPRHPCDEIKEPLRKAILKQLGLS

Download         Length: 177 bp

>T122167 NZ_CP038376:c2762123-2761947 [Escherichia coli O157:H7]
GTGAAACAAAGCGAGTTCAGACGTTGGCTCGAATCTCAGGGCGTCGATGTAGCGAATGGCAGCAACCATTTGAAACTCAG
GTTTCATGGGAGGCGCAGTGTCATGCCGCGTCACCCCTGCGATGAGATTAAAGAACCATTGCGTAAAGCAATCCTGAAAC
AACTCGGTTTGAGTTAA

Antitoxin


Download         Length: 139 a.a.        Molecular weight: 15246.63 Da        Isoelectric Point: 4.7386

>AT122167 WP_001270286.1 NZ_CP038376:c2761901-2761485 [Escherichia coli O157:H7]
MRYPVTLTPAPEGGYMVSFVDIPEALTQGETVAEAMEAAKDALLTAFDFYFEDNELIPLPSPLNSHDHFIEVPLSVASKV
LLLNAFLQSEITQQELARRIGKPKQEITRLFNLHHATKIDAVQLAAKALGKELSLVMV

Download         Length: 417 bp

>AT122167 NZ_CP038376:c2761901-2761485 [Escherichia coli O157:H7]
ATGCGTTATCCCGTCACTCTTACACCCGCGCCGGAAGGCGGTTATATGGTTTCTTTTGTGGATATCCCTGAAGCGTTGAC
GCAGGGCGAAACTGTCGCTGAAGCGATGGAAGCGGCAAAAGATGCTTTACTGACCGCATTTGATTTTTATTTTGAAGATA
ACGAGCTTATCCCTTTACCTTCGCCATTAAATAGTCATGATCACTTTATTGAAGTACCTTTGAGCGTCGCCTCTAAGGTA
TTGCTGTTAAATGCTTTTTTACAGTCAGAAATCACTCAGCAAGAGTTAGCCAGGCGAATTGGCAAACCTAAACAAGAGAT
TACTCGCCTATTTAACTTGCATCATGCGACAAAAATCGACGCCGTCCAGCTCGCGGCAAAGGCGCTTGGCAAAGAGTTAT
CGCTGGTGATGGTTTAA

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
PDB 6HPB

Antitoxin

Source ID Structure

References